Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C16
(298 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 120 2e-28
01_02_0051 - 10655867-10657057 120 2e-28
01_03_0090 - 12347165-12348349 119 4e-28
06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961... 30 0.28
11_01_0271 + 2039100-2041760 29 0.65
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 28 1.5
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 27 2.6
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 27 3.5
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 26 4.6
10_08_0657 - 19632363-19632494,19632587-19632864,19632964-196330... 26 6.0
04_04_0275 - 24084328-24084564,24084660-24084995 26 6.0
05_01_0173 - 1199668-1199685,1199907-1199969,1200277-1200379,120... 25 8.0
04_04_0853 + 28745953-28747635 25 8.0
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378... 25 8.0
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844... 25 8.0
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 25 8.0
>05_01_0264 + 2030080-2031270
Length = 396
Score = 120 bits (289), Expect = 2e-28
Identities = 54/98 (55%), Positives = 68/98 (69%)
Frame = +3
Query: 3 TRLRRSEVFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSDKIELETLRDEIKE 182
T +R++ W RPD KTQVT EY GA VP RVHTV++S QH + + + + ++KE
Sbjct: 156 TEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLISTQHDETVTNDEIAADLKE 215
Query: 183 KVIKEVIPAQYLDEKTVIHINPCGLFIIGGPQSDAGLT 296
VIK VIP QYLDEKT+ H+NP G F+IGGP DAGLT
Sbjct: 216 HVIKPVIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLT 253
>01_02_0051 - 10655867-10657057
Length = 396
Score = 120 bits (289), Expect = 2e-28
Identities = 54/98 (55%), Positives = 68/98 (69%)
Frame = +3
Query: 3 TRLRRSEVFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSDKIELETLRDEIKE 182
T +R++ W RPD KTQVT EY GA VP RVHTV++S QH + + + + ++KE
Sbjct: 156 TEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLISTQHDETVTNDEIAADLKE 215
Query: 183 KVIKEVIPAQYLDEKTVIHINPCGLFIIGGPQSDAGLT 296
VIK VIP QYLDEKT+ H+NP G F+IGGP DAGLT
Sbjct: 216 HVIKPVIPEQYLDEKTIFHLNPSGRFVIGGPHGDAGLT 253
>01_03_0090 - 12347165-12348349
Length = 394
Score = 119 bits (287), Expect = 4e-28
Identities = 53/98 (54%), Positives = 69/98 (70%)
Frame = +3
Query: 3 TRLRRSEVFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSDKIELETLRDEIKE 182
T +R++ W RPD KTQVT EY+ GA VP RVHTV++S QH + + + + ++KE
Sbjct: 155 TEVRKNGTCAWLRPDGKTQVTVEYLNDAGAMVPVRVHTVLISTQHDETVTNDEIAADLKE 214
Query: 183 KVIKEVIPAQYLDEKTVIHINPCGLFIIGGPQSDAGLT 296
VIK VIP +YLDEKT+ H+NP G F+IGGP DAGLT
Sbjct: 215 HVIKPVIPDKYLDEKTIFHLNPSGRFVIGGPHGDAGLT 252
>06_01_1186 -
10195175-10195621,10195882-10195930,10196019-10196168,
10196513-10196658,10196877-10196914,10197000-10197216,
10197393-10197611,10197753-10197879,10198631-10198812,
10198928-10199131,10199773-10199782,10200789-10200815,
10201072-10201132,10201731-10201851
Length = 665
Score = 30.3 bits (65), Expect = 0.28
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 39 RPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSDKIELETLRDEI--KEKVIKEVIPAQ 212
RP+S + C +F +RV V ++ H DK+E++ L K+++ +E++
Sbjct: 451 RPESIESILCGSLFPPEYPTKERVKHWVTAVTHFDKVEMKALEQIFLQKQRLQQEMLKYM 510
Query: 213 YLDEKTVIH 239
L + + H
Sbjct: 511 SLRQTSQAH 519
>11_01_0271 + 2039100-2041760
Length = 886
Score = 29.1 bits (62), Expect = 0.65
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 274 GPPMMKSPHGLMWITVFSSRYCAGMTSLITFSLISSRNVS 155
G PM++ H ++ F A + SL+T L+ SR VS
Sbjct: 221 GDPMLRGNHPYRFMVFFYFNTTAFVASLVTIMLLMSRTVS 260
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 27.9 bits (59), Expect = 1.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 80 CWWSYRAPASSYRSCIA 130
C+W Y+ P+ Y SC++
Sbjct: 123 CFWGYKVPSGLYNSCLS 139
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Frame = +3
Query: 3 TRLRRSEVFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVV---------SLQHSDKIEL 155
T+ R +V WAR + VTC + +P+ + + S + S+KI++
Sbjct: 595 TKQRAEKVIGWARSHYLSSVTCPSIKGDRLIIPRESLDLAIGRLKAQEASSRKSSEKIKI 654
Query: 156 ETLRDEIKEKVIKEVIPAQYLDEK 227
+DE + I V+P + K
Sbjct: 655 -LAKDEFERNFISAVVPPNEIGVK 677
>05_01_0471 -
3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 49 PKHRLLANTYLLVELPCPSEFIP 117
P+ +L T V LPCP +++P
Sbjct: 446 PEQHVLEETQPNVSLPCPGQYVP 468
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 26.2 bits (55), Expect = 4.6
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +2
Query: 80 CWWSYRAPASSYRSCI 127
C+W Y+ P Y SC+
Sbjct: 115 CFWGYKVPFGLYNSCL 130
>10_08_0657 -
19632363-19632494,19632587-19632864,19632964-19633084,
19634337-19634438,19634510-19634622,19635000-19635373,
19635663-19635688,19636048-19636261,19636343-19636460,
19636930-19637017,19637113-19637280,19637559-19637631,
19637796-19637902,19638057-19638094,19638190-19638305,
19638579-19638698,19639498-19640000
Length = 896
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 33 WARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSDKIELETLRDEIKEKVIKEVIPAQ 212
W PD++ T ++ G + Q + V +SL+H+ K LRD+ K ++ +V+
Sbjct: 719 WQFPDTEVADTKDHPRGGQSKQSQGIQLVPLSLRHAIK---RYLRDQDKAQMNLKVLLLS 775
Query: 213 YLDEKT 230
E+T
Sbjct: 776 ASFERT 781
>04_04_0275 - 24084328-24084564,24084660-24084995
Length = 190
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 153 LETLRDEIKEKVIKEVIPAQ 212
LE ++E KEK++ E++PA+
Sbjct: 139 LEAKQEEWKEKIVTEILPAR 158
>05_01_0173 -
1199668-1199685,1199907-1199969,1200277-1200379,
1201408-1201514
Length = 96
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 253 PHGLMWITVFSSRYCAGMTSLITFSLIS 170
PH W TV CA M L++F L S
Sbjct: 18 PHNKRWHTVAGKGLCAVMCLLLSFCLNS 45
>04_04_0853 + 28745953-28747635
Length = 560
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 77 YVFASNLCFGIRSRPPEHFASSQP 6
Y+F S+L FG+ +R + QP
Sbjct: 356 YIFPSSLSFGVSTRVSNELGAGQP 379
>03_06_0591 +
34936583-34936674,34937631-34937640,34937716-34937831,
34938249-34938261,34939924-34939977,34940020-34940170,
34940619-34940647
Length = 154
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 168 HAMSLIRFCQNVAAIQLRY 112
H+M L+R+C NV LRY
Sbjct: 45 HSMLLMRYCTNVMDHNLRY 63
>02_05_1240 +
35181983-35182615,35183025-35183856,35183936-35184497,
35184581-35184722,35184832-35184939,35185055-35185267,
35185355-35185465,35185684-35185878,35186094-35186268,
35186379-35186413
Length = 1001
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 131 QRYNYGMNSLGHGSSTSKYVFASNLCFGI 45
Q+ YG+ LG S S ++ S+ FGI
Sbjct: 562 QKLQYGVPYLGKSGSLSPNIYGSDPAFGI 590
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 199 TSLITFSLISSRNVSNSILSECCS 128
TS++ + S+ ++SNSI S+ CS
Sbjct: 2018 TSMVEIPITSNHHLSNSISSKTCS 2041
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,085,410
Number of Sequences: 37544
Number of extensions: 140901
Number of successful extensions: 455
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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