Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C16
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.46 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   0.80 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   3.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   5.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   7.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   7.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   7.4  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.46
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 265 MMKSPHGLMWITVFSSRYCAG 203
           MMKS  G+MWI +     C+G
Sbjct: 1   MMKSLVGIMWIVLVLISGCSG 21


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 0.80
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 92  SSTSKYVFASNLCFGIRSRPPEHFASSQ 9
           SST   +   NL   + S+PP +F  SQ
Sbjct: 361 SSTGSSIPKLNLSTALMSQPPPNFGVSQ 388


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 30 WWARPDSKTQVT 65
          WW+RP    Q T
Sbjct: 45 WWSRPREPAQTT 56


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 5   EAETKRSVLVGATGFQNTGYLRIRI 79
           +A  + S+ VGA+G    GYL + I
Sbjct: 228 DAIDEASIAVGASGNVFAGYLLVFI 252


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  GRDRIPKHRLLANTYLLVEL 93
           G + +  H+LL N Y L  L
Sbjct: 256 GEEYLYSHKLLLNRYYLERL 275


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  GRDRIPKHRLLANTYLLVEL 93
           G + +  H+LL N Y L  L
Sbjct: 256 GEEYLYSHKLLLNRYYLERL 275


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 180 EKVIKEVIPAQYLDEK 227
           EKV KE I  ++ +EK
Sbjct: 246 EKVAKEDIQVRFFEEK 261


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 180 EKVIKEVIPAQYLDEK 227
           EKV KE I  ++ +EK
Sbjct: 246 EKVAKEDIQVRFFEEK 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,696
Number of Sequences: 438
Number of extensions: 1557
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)