Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C14
(296 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 31 0.11
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 28 1.4
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 26 5.6
Z81089-2|CAB03136.1| 259|Caenorhabditis elegans Hypothetical pr... 26 5.6
Z34800-1|CAA84321.2| 420|Caenorhabditis elegans Hypothetical pr... 26 5.6
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 26 5.6
Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 25 7.4
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 25 7.4
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z49129-2|CAA88961.1| 177|Caenorhabditis elegans Hypothetical pr... 25 9.7
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 25 9.7
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-... 25 9.7
AL161712-1|CAC35913.1| 236|Caenorhabditis elegans Hypothetical ... 25 9.7
AF016449-5|AAG23995.1| 343|Caenorhabditis elegans Serpentine re... 25 9.7
AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical ... 25 9.7
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +2
Query: 2 HEAETILTTARAASEDFLFTFAEGQGKIHKKSQTGGMV-CLSLPVGGTPRRIASVVEQAC 178
H+A TILT + A +D E + GM+ C + P G IA + ++
Sbjct: 294 HKARTILTESHEAMDDVKERVLEHLAVCKMNNSVKGMILCFTGPPGIGKTSIAKAIAESM 353
Query: 179 SR--QRALAGGVGCSSQMWGSNQS 244
R QR GG+ S + G ++
Sbjct: 354 GRKFQRVSLGGIRDESDIRGHRRT 377
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 77 GKIHKKSQTGGMVCLSLPVGGTPRRIASVVEQACSRQRALAGGVGCSSQMWGSNQSTCIS 256
G++ + TGG + + T R++ + + RQ+A G S+M G+ S +
Sbjct: 406 GQVKTGNVTGGRIRTAAVDQKTRARMSQKMMRQMERQKAAGGMTSIRSKMAGTASSVTFT 465
Query: 257 PCQ 265
P Q
Sbjct: 466 PIQ 468
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
protein K08H10.7 protein.
Length = 1020
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 21 SLQHEQ-HPRIFYSLSLKDRGKFTRNRKRAVWSVYLYLSVE 140
SL+HE+ RIFY ++LK K + WS +S E
Sbjct: 661 SLRHEKGSKRIFYQIALKINAKLGGINQELDWSEIAEISPE 701
>Z81089-2|CAB03136.1| 259|Caenorhabditis elegans Hypothetical
protein F53H4.3 protein.
Length = 259
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = -3
Query: 294 NDVIGGSAIVWQGEMQVLWLEPHIWLEQPTPPASALCRLHACSTTEAIRRGVPPTGRDRQ 115
N +GG + E ++L E +L P + TTE+ + PT +
Sbjct: 35 NRNLGGFGNLANAESRILTAERQQFLSGLPPLPMTHDEIIHVLTTESPTTTIKPTAKPTT 94
Query: 114 TIPPVCDFL*IFPCPSA 64
+PPV D + + P A
Sbjct: 95 PLPPVPDQMAVNDIPEA 111
>Z34800-1|CAA84321.2| 420|Caenorhabditis elegans Hypothetical
protein F45H7.1 protein.
Length = 420
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 33 EQHPRIFYSLSLKDRGKFTRNRKRAVWSVY 122
E +I+ SL R + + NRK AV SVY
Sbjct: 316 EARDQIYESLPASFRNRKSENRKNAVGSVY 345
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 21 SLQHEQ-HPRIFYSLSLKDRGKFTRNRKRAVWSVYLYLSVE 140
SL+HE+ RIFY ++LK K + WS +S E
Sbjct: 661 SLRHEKGSKRIFYQIALKINAKLGGINQELDWSEIAEISPE 701
>Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical
protein F35G12.4b protein.
Length = 680
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 188 RALAGGVGCSSQMWGSNQSTCISPC 262
RAL+ G + ++W Q CI+ C
Sbjct: 234 RALSAGSDATIRLWDIGQQRCIATC 258
>Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical
protein F35G12.4a protein.
Length = 683
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 188 RALAGGVGCSSQMWGSNQSTCISPC 262
RAL+ G + ++W Q CI+ C
Sbjct: 234 RALSAGSDATIRLWDIGQQRCIATC 258
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 101 TGGMVCLSLPVGGTPRRIASVVEQACSRQRALAGGVGCSSQMWGSNQSTC 250
TGG C PR S +++ C Q+ A G CS ++ S S C
Sbjct: 614 TGGSYCARGRCECPPRM--SAIDKKCVHQQTAAPGEPCSEKVACSPFSVC 661
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 101 TGGMVCLSLPVGGTPRRIASVVEQACSRQRALAGGVGCSSQMWGSNQSTC 250
TGG C PR S +++ C Q+ A G CS ++ S S C
Sbjct: 614 TGGSYCARGRCECPPRM--SAIDKKCVHQQTAAPGEPCSEKVACSPFSVC 661
>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
protein R13H4.1 protein.
Length = 1305
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 70 RTGENSQEIANGRYGLSISTCRWNTSANRF 159
R+G+N Q + R + I T R ++NRF
Sbjct: 446 RSGDNGQSARSNRKSVKIETPRSPENSNRF 475
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
W05B2.4 protein.
Length = 2265
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 11 ETILTTARAASEDFLFTFAEGQGKIHK 91
+T+ T A+ +F+ FA+ QGK+ K
Sbjct: 1553 DTLRITVVLATANFISIFADDQGKVEK 1579
>Z49129-2|CAA88961.1| 177|Caenorhabditis elegans Hypothetical
protein T05B9.2 protein.
Length = 177
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 134 GGTPRRIASVVEQACSRQRALAGGVGCSSQMWGSNQSTC 250
GG RRI + V++ C+++ C W S + C
Sbjct: 5 GGNYRRIRNFVDRECAKE--CIEDFSCFGYEWNSEEKIC 41
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 44 EDFLFTFAE-GQG--KIHKKSQTGGMVCLSLPVGGTPRRIASVV 166
+DFL T + GQ + K S +GG+ L+ P+ PR VV
Sbjct: 236 DDFLDTLRQQGQSIAPVQKASLSGGVSSLAAPISTAPRVKREVV 279
>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
nephrocystin-4-like protein protein.
Length = 1305
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 70 RTGENSQEIANGRYGLSISTCRWNTSANRF 159
R+G+N Q + R + I T R ++NRF
Sbjct: 446 RSGDNGQSARSNRKSVKIETPRSPENSNRF 475
>AL161712-1|CAC35913.1| 236|Caenorhabditis elegans Hypothetical
protein Y66D12A.1 protein.
Length = 236
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 55 IHFR*RTGENSQEIANGRYGLSISTCRWNTSANRFC 162
IH R + GE+S + + G S+ T +A FC
Sbjct: 99 IHDRTKRGESSSSSMSSKSGNSVDTLSNKKTAGTFC 134
>AF016449-5|AAG23995.1| 343|Caenorhabditis elegans Serpentine
receptor, class h protein185 protein.
Length = 343
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 194 ALSVDCTLAPLQKRFAEVFHRQVEIDRPYRPFAISCEFSPVL 69
AL + T P ++RF E+F + ++ + R F I +S VL
Sbjct: 110 ALLIIVTPLPFERRFYELFGGRSKLWQKLRIFWIMMHYSSVL 151
>AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical
protein Y71H2AM.10 protein.
Length = 871
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 225 IWLEQPTPPASALCRLHACSTTEAIRRGVPPTGRDRQTIPPVCDFL*IFPCPS 67
+WL QP PP+S + ++ + + A R+ R +I + +F PS
Sbjct: 750 VWLSQPQPPSSTISSGYSGNKSTAERQSSNGDDPSRTSISYHGSEISVFIAPS 802
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,507,832
Number of Sequences: 27780
Number of extensions: 121851
Number of successful extensions: 380
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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