Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C14
         (296 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    20   5.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    20   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 149  AEVFHRQVEIDRPYRPF 99
            AE  + +VE+DR  RP+
Sbjct: 1165 AENAYPEVELDRELRPY 1181


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 118 SISTCRWNTSANRFCSGASVQSTESAG 198
           S+S C   T+++   + +S  S  SAG
Sbjct: 172 SVSECSLGTASSTSSTASSRNSDRSAG 198


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 116 CLSLPVGGTPRRIASVVEQA 175
           C  +  GG+ ++  S+VE+A
Sbjct: 95  CAEIAHGGSSKKRKSIVERA 114


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
          protein STG-1 protein.
          Length = 397

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 5/9 (55%), Positives = 5/9 (55%)
 Frame = -2

Query: 40 CCSCCSEYG 14
          CC CC   G
Sbjct: 12 CCWCCDNLG 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,575
Number of Sequences: 438
Number of extensions: 1728
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)