Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C13
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262...    28   1.2  
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506...    26   3.6  
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952...    26   4.8  
01_05_0689 + 24308932-24309217,24310064-24310273,24311122-243112...    26   4.8  
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781...    25   6.3  
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340           25   8.3  
04_01_0282 - 3764110-3764666,3765117-3765180                           25   8.3  

>02_01_0365 +
           2621302-2621711,2622442-2622620,2623381-2623496,
           2623626-2623964,2624113-2624307,2624505-2624594,
           2625288-2625518,2625632-2625952
          Length = 626

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +2

Query: 101 IDDGEFNMDELITFNRPHSDHDYQVVKNTDAPYKVLPNGYVE*PIDEDWPPN 256
           ID GE  + E++T  RP  D DY  +          P G  E   DEDW  N
Sbjct: 321 IDFGEDGLAEILTHQRPRRDVDYTQLNEQMFGE---PIGNDEQSEDEDWGLN 369


>02_03_0141 -
           15649188-15649274,15649376-15649421,15650476-15650606,
           15652168-15652254,15652470-15652538,15652699-15652845,
           15652923-15653003,15653122-15653223,15653392-15653429,
           15653590-15653692,15653766-15653888,15654872-15654951,
           15655356-15655504,15657794-15658010,15658379-15658448,
           15659167-15659313,15659430-15659486,15663270-15663436,
           15663479-15663569,15664044-15665081,15665580-15665695,
           15666104-15667039,15667108-15667170,15667416-15667970,
           15668293-15668305
          Length = 1570

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 101 IDDGEFNMDELITFNRPHSDHDYQVVKNTD 190
           I +G   +DEL+  N P S H  + VKN +
Sbjct: 227 IPEGSSVLDELVYSNIPQSTHMLEPVKNCE 256


>01_06_0919 -
           32993752-32993856,32994383-32994592,32994666-32995220,
           32995705-32995926,32996381-32996511,32997456-32998353,
           32998453-32998530,32998612-32998683,32998728-32998763,
           32999413-33000353,33000531-33000659,33000751-33000894,
           33000994-33001060,33002434-33002502,33003144-33003278
          Length = 1263

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 25  GPRQLAGGHESPPLGHQQN 81
           G R LA GH  PP G Q N
Sbjct: 445 GSRSLASGHVLPPQGLQHN 463


>01_05_0689 +
           24308932-24309217,24310064-24310273,24311122-24311270,
           24311351-24311627,24312723-24313027
          Length = 408

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 260 LSSVANPRLSVTRRNRSVVLCTVHQCS 180
           L S ANP LS T R  +  +  +HQC+
Sbjct: 366 LGSYANPPLSETCRGGAYKVSQLHQCT 392


>09_04_0345 +
           16876489-16876614,16876718-16876876,16877989-16878102,
           16878701-16878882,16879142-16879241,16879597-16879638,
           16879818-16879994,16880084-16880175,16880633-16880779,
           16880832-16881036
          Length = 447

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 89  DETVIDDGEFNMDELITFNRPHSD 160
           D  VI++ EF+++EL+  N P +D
Sbjct: 422 DGEVIEEDEFSLEELMADNSPVND 445


>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
          Length = 603

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 245 NPRLSVTRRNRSVVLCTVHQCS*PLGNHDRNVDG 144
           NP + +    R++ +  +H+    LGN  R + G
Sbjct: 416 NPEMLMAGTRRNLFITAIHELEGILGNEPREIQG 449


>04_01_0282 - 3764110-3764666,3765117-3765180
          Length = 206

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 74  WWPRGGLS*PPAS 36
           WW  GG++ PPAS
Sbjct: 157 WWRHGGVASPPAS 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,695,404
Number of Sequences: 37544
Number of extensions: 110303
Number of successful extensions: 253
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)