Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C13
         (263 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   4.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   4.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   5.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   5.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +2

Query: 41   PAVTRALLSATNKMSLDETVIDDGEFNMDELITFNRPHSDHDYQVVKNTDAP 196
            P   R +  ATN ++L      DG   M   +  ++  +  ++  V N   P
Sbjct: 1464 PEAARFIEVATNSITLHLNAWSDGGCPMIYFVVEHKKKNQQEWNQVSNNVKP 1515



 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +1

Query: 22   PGPRQLAGGHESPPLGHQQNVA 87
            P P     G   PP+GH  N +
Sbjct: 1749 PHPGNGHSGTMGPPVGHPTNAS 1770


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 98  VIDDGEFNMDELITFNRPHSDHDYQVVKNTDAPYKVLPNGYVE 226
           VI D   ++  +I+ N+  S     +VK TD   K +   YV+
Sbjct: 406 VISDDNIHIKGVISLNKLTSYVISGIVKCTDFVDKAMVKQYVK 448


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 77  CWWPRG 60
           C+WPRG
Sbjct: 142 CYWPRG 147


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 49  HESPPLGHQQNVAXXXXXXXXXIQYGRTDHVQP 147
           H + P  HQ +           IQ G T H  P
Sbjct: 436 HAATP-HHQHSTPLAHSSYPAAIQIGHTPHHHP 467


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 143 NRPHSDHDYQVVKN 184
           ++PH DH+ +  KN
Sbjct: 51  SQPHQDHNKEKSKN 64


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 25  GPRQLAGGHESPPLGHQQ 78
           G R  + G+  PP  HQ+
Sbjct: 108 GKRPASPGYVQPPTKHQK 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,936
Number of Sequences: 438
Number of extensions: 875
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)