Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C12
(269 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 132 1e-31
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 132 1e-31
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 132 1e-31
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 132 1e-31
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 98 4e-21
AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for t... 30 1.2
BC050547-1|AAH50547.1| 227|Homo sapiens paired immunoglobin-lik... 29 3.5
AJ400846-1|CAC19194.1| 227|Homo sapiens cell surface receptor F... 29 3.5
AJ400845-1|CAC19193.1| 226|Homo sapiens cell surface receptor F... 29 3.5
AF161081-1|AAD52965.1| 227|Homo sapiens activating receptor PIL... 29 3.5
AY971125-1|AAY18546.1| 134|Homo sapiens immunoglobulin alpha he... 28 6.1
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 132 bits (320), Expect = 1e-31
Identities = 58/70 (82%), Positives = 62/70 (88%)
Frame = +1
Query: 58 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 237
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 238 DTGNFAWGSE 267
D GNF+WGSE
Sbjct: 61 DVGNFSWGSE 70
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 132 bits (320), Expect = 1e-31
Identities = 58/70 (82%), Positives = 62/70 (88%)
Frame = +1
Query: 58 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 237
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 238 DTGNFAWGSE 267
D GNF+WGSE
Sbjct: 61 DVGNFSWGSE 70
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 132 bits (320), Expect = 1e-31
Identities = 58/70 (82%), Positives = 62/70 (88%)
Frame = +1
Query: 58 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 237
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 238 DTGNFAWGSE 267
D GNF+WGSE
Sbjct: 61 DVGNFSWGSE 70
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 132 bits (320), Expect = 1e-31
Identities = 58/70 (82%), Positives = 62/70 (88%)
Frame = +1
Query: 58 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 237
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRL
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
Query: 238 DTGNFAWGSE 267
D GNF+WGSE
Sbjct: 61 DVGNFSWGSE 70
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 98.3 bits (234), Expect = 4e-21
Identities = 43/54 (79%), Positives = 47/54 (87%)
Frame = +1
Query: 58 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 219
MGISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG T+
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
>AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for type
III collagen protein.
Length = 354
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 49 RAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTK 219
R + +SRDH H A R ++KK+K EL T + RI ++ SR N K
Sbjct: 41 RCRFAVSRDHCHCTLAWKTARLHLKKKKKKELNL-VYTTVMNTNRIFKMIFSRVANVK 97
>BC050547-1|AAH50547.1| 227|Homo sapiens paired immunoglobin-like
type 2 receptor beta protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -1
Query: 68 LIPILALVPPRAEFMQPGGST 6
L+P+L L+ P A F+QPGGST
Sbjct: 6 LLPLLLLLQPPA-FLQPGGST 25
>AJ400846-1|CAC19194.1| 227|Homo sapiens cell surface receptor
FDFACT1 protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -1
Query: 68 LIPILALVPPRAEFMQPGGST 6
L+P+L L+ P A F+QPGGST
Sbjct: 6 LLPLLLLLQPPA-FLQPGGST 25
>AJ400845-1|CAC19193.1| 226|Homo sapiens cell surface receptor
FDFACT2 protein.
Length = 226
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -1
Query: 68 LIPILALVPPRAEFMQPGGST 6
L+P+L L+ P A F+QPGGST
Sbjct: 6 LLPLLLLLQPPA-FLQPGGST 25
>AF161081-1|AAD52965.1| 227|Homo sapiens activating receptor
PILRbeta protein.
Length = 227
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -1
Query: 68 LIPILALVPPRAEFMQPGGST 6
L+P+L L+ P A F+QPGGST
Sbjct: 6 LLPLLLLLQPPA-FLQPGGST 25
>AY971125-1|AAY18546.1| 134|Homo sapiens immunoglobulin alpha heavy
chain variable region protein.
Length = 134
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 29 IRHEAARGPRWVSVVIIGIRGGLRAANVR 115
+R +GP WVSV+ G RG +A V+
Sbjct: 37 VRQAPGKGPEWVSVISGGGRGTYQADXVK 65
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,520,798
Number of Sequences: 237096
Number of extensions: 1077640
Number of successful extensions: 2147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2147
length of database: 76,859,062
effective HSP length: 67
effective length of database: 60,973,630
effective search space used: 1341419860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -