Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C12
(269 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 110 1e-25
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.20
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.20
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.20
AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical... 28 1.0
Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical pr... 27 1.8
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 3.2
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 3.2
AC024790-11|AAF60631.1| 199|Caenorhabditis elegans Hypothetical... 26 3.2
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 26 4.2
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 26 4.2
AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical ... 26 4.2
AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical ... 26 4.2
AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical ... 26 4.2
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 26 4.2
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 25 5.6
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 25 5.6
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 25 5.6
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 25 5.6
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 25 5.6
U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical pr... 25 5.6
L13200-5|AAZ32789.1| 148|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 25 5.6
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 25 5.6
Z92790-2|CAB07224.2| 377|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr... 25 7.3
U64844-12|AAB18312.4| 417|Caenorhabditis elegans Hypothetical p... 25 7.3
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 25 7.3
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 25 7.3
AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 25 7.3
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 25 7.3
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 25 9.7
U42836-1|ABC48243.1| 497|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 25 9.7
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 25 9.7
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 110 bits (265), Expect = 1e-25
Identities = 49/70 (70%), Positives = 56/70 (80%)
Frame = +1
Query: 58 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 237
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 238 DTGNFAWGSE 267
D+GNF+W SE
Sbjct: 61 DSGNFSWASE 70
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.20
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 179 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 54
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.20
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 179 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 54
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.20
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 179 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 54
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical
protein Y50D7A.8 protein.
Length = 569
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 25 MNSARGGTRAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 204
+ +AR A++ R +R++ KRA +K RK E +P G HL+ S
Sbjct: 251 IRNARKAESARLRYQRMTPDERKSYNMKRAAAKKTRKEEEEKPDDMEHYGDNEEHLMDSS 310
Query: 205 G 207
G
Sbjct: 311 G 311
>Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical
protein T28B8.5 protein.
Length = 527
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 55 WPSCRLVPNSCSPGDP 8
WPS VP C+PG P
Sbjct: 375 WPSDSYVPTECNPGGP 390
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 191 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 102
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 191 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 102
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>AC024790-11|AAF60631.1| 199|Caenorhabditis elegans Hypothetical
protein Y47D7A.12 protein.
Length = 199
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 19 GCMNSARGGTRAKMGISRDHWHKRRATGGKRAPIRKK 129
G NSA GT A G ++RRA RA R +
Sbjct: 136 GTYNSASAGTPAATGAGASSGYRRRAKAKARARARAR 172
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 70 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 201
R HWHKR T + P RK R+ + R A ++ P+ + L+RS
Sbjct: 15 RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 70 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRS 201
R HWHKR T + P RK R+ + R A ++ P+ + L+RS
Sbjct: 15 RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS 57
>AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical
protein Y37A1B.2d protein.
Length = 564
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 105 AARSPPLMPMITTDTHLGPRAASCR 31
A+R PP++P T GP AAS R
Sbjct: 61 ASRPPPVLPPPLPPTSSGPPAASSR 85
>AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical
protein Y37A1B.2c protein.
Length = 566
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 105 AARSPPLMPMITTDTHLGPRAASCR 31
A+R PP++P T GP AAS R
Sbjct: 61 ASRPPPVLPPPLPPTSSGPPAASSR 85
>AL023835-1|CAA19486.1| 164|Caenorhabditis elegans Hypothetical
protein Y37A1B.2a protein.
Length = 164
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 105 AARSPPLMPMITTDTHLGPRAASCR 31
A+R PP++P T GP AAS R
Sbjct: 61 ASRPPPVLPPPLPPTSSGPPAASSR 85
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +1
Query: 31 SARGGTRAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGG 210
S G+R+ S WH+ + T + PI+ RP + PQ+ + G
Sbjct: 999 SGPSGSRSNNSFSDLPWHRAQDTPFGKVPIQDNFAMSGPRPMPPRPMPPQQSPFFNNAPG 1058
Query: 211 NTKY 222
N Y
Sbjct: 1059 NGFY 1062
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 226 ALRLDTGNFAWGSE 267
A+++D G+FAWGS+
Sbjct: 613 AIKMDGGSFAWGSK 626
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 226 ALRLDTGNFAWGSE 267
A+++D G+FAWGS+
Sbjct: 613 AIKMDGGSFAWGSK 626
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 226 ALRLDTGNFAWGSE 267
A+++D G+FAWGS+
Sbjct: 613 AIKMDGGSFAWGSK 626
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 226 ALRLDTGNFAWGSE 267
A+++D G+FAWGS+
Sbjct: 613 AIKMDGGSFAWGSK 626
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 226 ALRLDTGNFAWGSE 267
A+++D G+FAWGS+
Sbjct: 613 AIKMDGGSFAWGSK 626
>U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical
protein C28H8.9b protein.
Length = 192
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/38 (28%), Positives = 15/38 (39%)
Frame = +1
Query: 55 KMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTK 168
+ G D W R+ G P++K A NTK
Sbjct: 151 EFGSDEDDWSSRKRRKGNLGPVQKATSSRKKNAARNTK 188
>L13200-5|AAZ32789.1| 148|Caenorhabditis elegans Hypothetical
protein ZK1236.5 protein.
Length = 148
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 76 HWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSR 204
HW++R G R PI ++K GRP + + R++++R R
Sbjct: 15 HWNRRIWEVGYRGPILPQQK-ATGRP--DYPVSANRVNILRER 54
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +1
Query: 70 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 219
R+ G +R+P R +R+ + P N + P+R + RS ++
Sbjct: 55 RERMENLTLEGKRRSPPRVRREPPMRSPGRNEVMSPERRYGTRSASSRSQ 104
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +1
Query: 226 ALRLDTGNFAWGSE 267
A+++D G+FAWGS+
Sbjct: 613 AIKMDGGSFAWGSK 626
>Z92790-2|CAB07224.2| 377|Caenorhabditis elegans Hypothetical
protein H03G16.2 protein.
Length = 377
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 188 WMRWGPSLVLAAGRPNSYFLFLRMGARLP 102
W R G + L + +P+ +FL + + +LP
Sbjct: 70 WGRAGEGVFLTSDKPDGFFLLVGIQQKLP 98
>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 97 TGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVR 198
T K IR K Y+ G AN LGP + L+R
Sbjct: 65 TSNKNDSIRNK--YDFGMSVANNILGPFEMKLLR 96
>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 97 TGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVR 198
T K IR K Y+ G AN LGP + L+R
Sbjct: 65 TSNKNDSIRNK--YDFGMSVANNILGPFEMKLLR 96
>U64844-12|AAB18312.4| 417|Caenorhabditis elegans Hypothetical
protein T22F3.10 protein.
Length = 417
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 191 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP--PVALLLCQ*SRLIPILALV 45
KW+ W + G L+++ GAR P ++ C + L+P+ A +
Sbjct: 28 KWIMWAVAAGTIIGTIPINLLYVKYGARYPFLIAGVVSCLATALVPLAAKI 78
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 49 RAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI 186
+A MG R AT +PI+K K+E+ A +T ++I
Sbjct: 488 QAPMGSGERRKATRLATSATNSPIKKVAKHEVPATAPSTPAKKRKI 533
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 206 PRDLTKWMRWGPSLVLAAGRPN 141
PR++ +W+RW V A+ + N
Sbjct: 543 PRNVARWLRWDKPPVAASKKKN 564
>AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 206 PRDLTKWMRWGPSLVLAAGRPN 141
PR++ +W+RW V A+ + N
Sbjct: 288 PRNVARWLRWDKPPVAASKKKN 309
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 49 RAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI 186
+A MG R AT +PI+K K+E+ A +T ++I
Sbjct: 488 QAPMGSGERRKATRLATSATNSPIKKVAKHEVPATAPSTPAKKRKI 533
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
K04B12.1 protein.
Length = 1764
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 164 VLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPILALVPPRAEFMQPGGSTS 3
VL A P+S LF + ARL P+++ L + + P L + R E + S
Sbjct: 1647 VLGAHSPSSRLLFAKDVARLRPLSVDLFKRVKNSPPLGMDELRTELVNMANDVS 1700
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 46 CRLVPNSCSPGDPLV 2
C ++PN CS G+PL+
Sbjct: 719 CPVLPNPCSLGEPLL 733
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
F26A3.8 protein.
Length = 1601
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 185 MRWGPSLVLAAGRPNSYFLFLRM 117
MRWG SL L G+P + F M
Sbjct: 1352 MRWGESLRLFDGKPIKIYHFFLM 1374
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
protein C29E6.2 protein.
Length = 1193
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 88 RRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 246
R A GG+ +R+ ++++ ++G +HL +R G+ + LD G
Sbjct: 495 RAAIGGQTGAVRQLLEWDIRLLLMKDEMGNSALHLA-ARSGHDATTKVLLDNG 546
>U42836-1|ABC48243.1| 497|Caenorhabditis elegans Hypothetical
protein T21F2.1a protein.
Length = 497
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 82 HKRRATGGKRAPIRKKR 132
H RR GGKR RK+R
Sbjct: 56 HDRRREGGKRKKFRKER 72
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 185 MRWGPSLVLAAGRPNSYFLFLRM 117
MRWG SL L G+P + F M
Sbjct: 1352 MRWGESLRLFDGKPIKIYHFFLM 1374
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 164 VLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPILALVPPRAEFMQPGGSTS 3
VL A P+S LF + ARL P+++ L + + P L + R E + S
Sbjct: 1649 VLGAHSPSSRLLFAKDVARLRPLSVDLFKRVKNSPPLGMDELRTELVNMANDVS 1702
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,053,881
Number of Sequences: 27780
Number of extensions: 139735
Number of successful extensions: 355
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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