Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C10
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 99 3e-22
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 99 3e-22
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 37 0.001
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 27 0.93
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 27 0.93
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 27 1.2
SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit L4|S... 25 3.7
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 25 3.7
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 24 6.5
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 24 8.6
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 24 8.6
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 98.7 bits (235), Expect = 3e-22
Identities = 44/55 (80%), Positives = 51/55 (92%)
Frame = +1
Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 369
+K+ VEAKQPNSA+RKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGR
Sbjct: 53 EKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGR 107
Score = 84.2 bits (199), Expect = 6e-18
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +3
Query: 48 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 212
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKI 55
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 98.7 bits (235), Expect = 3e-22
Identities = 44/55 (80%), Positives = 51/55 (92%)
Frame = +1
Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 369
+K+ VEAKQPNSA+RKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEV ++GFGR
Sbjct: 53 EKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGR 107
Score = 84.2 bits (199), Expect = 6e-18
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = +3
Query: 48 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 212
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV+EK+
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKI 55
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +1
Query: 190 RASSSKKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDG 315
R ++ V+ K+PNSA+RK RV+L G+ VTA++P G
Sbjct: 52 RGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIPGIG 92
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 27.1 bits (57), Expect = 0.93
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 100 ASSDGPTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLCVEAK 228
A+S+ P + KK RRT S +H +L A S++ EAK
Sbjct: 118 AASEVPKKKYKKIKVDPSARRTSSRMHTVLMAQSTETRLQEAK 160
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 0.93
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 209 SCALKPSSRIQPFVSVFVYSSL 274
SC LKP IQP +S F+ SSL
Sbjct: 85 SCFLKPILSIQPKLSFFIDSSL 106
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 199 SSKKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 336
+S LC E P + + IK +T+ +PR+ +NH E
Sbjct: 19 ASTILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRE 64
>SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit
L4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 76 AVRIPRGLPITIARTRSAPR 17
AVRIP+G + + +SAP+
Sbjct: 12 AVRIPKGFVFPVPKVKSAPK 31
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 284 LPFLMSCTRTHLRRAEFGCLASTHN 210
L L+SC +T+ A FGC T++
Sbjct: 133 LSSLLSCMKTYRATALFGCSTDTYD 157
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 111 WADKEFKKAHMGTRWKANPFGGASHAKGIV 200
W D EF H ++ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 266 CTRTHLRRAEFGCLASTHNFFEDDALSMRCTTEGVRLPSRT 144
C + +L+ + A ++FE + + + CT G R PS+T
Sbjct: 35 CRKIYLKLG-WATKAVGSSYFESEKIKIACTVSGPR-PSKT 73
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 117 DKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 212
D+EF+ + +K PF HA +V+ V
Sbjct: 143 DREFRIGRLKFNFKPGPFNVKEHALIVVMSSV 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,311
Number of Sequences: 5004
Number of extensions: 34619
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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