Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C10
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 97 3e-21
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 97 3e-21
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 78 2e-15
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 31 0.21
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 31 0.37
11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584 29 0.86
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 29 1.1
02_05_0775 + 31681720-31681953,31682106-31682246,31682357-316824... 29 1.1
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 29 1.5
04_03_1015 - 21734381-21736534 27 4.6
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 6.1
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 6.1
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 6.1
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 26 8.1
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 97.5 bits (232), Expect = 3e-21
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +1
Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 369
+K+ +EAKQPNSA+RKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGR
Sbjct: 52 EKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGR 106
Score = 80.6 bits (190), Expect = 4e-16
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +3
Query: 48 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 212
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 54
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 97.5 bits (232), Expect = 3e-21
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +1
Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 369
+K+ +EAKQPNSA+RKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGR
Sbjct: 52 EKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGR 106
Score = 97.5 bits (232), Expect = 3e-21
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +1
Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 369
+K+ +EAKQPNSA+RKC RVQL+KNGKK+ AFVP DGCLN IEENDEV +AGFGR
Sbjct: 222 EKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGR 276
Score = 81.8 bits (193), Expect = 2e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Frame = +3
Query: 30 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 209
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 210 V 212
+
Sbjct: 224 I 224
Score = 80.6 bits (190), Expect = 4e-16
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +3
Query: 48 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 212
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 54
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 77.8 bits (183), Expect = 2e-15
Identities = 42/88 (47%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +3
Query: 3 CMNSARGADRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGA 179
C+ +RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+
Sbjct: 56 CVRCDVNGERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGS 114
Query: 180 SHAKGIVLEKVVR*SQAAEFSPS*VCSC 263
SHAKGIVLEK+ A+ S +C C
Sbjct: 115 SHAKGIVLEKI---GIEAKQPNSAICKC 139
Score = 77.8 bits (183), Expect = 2e-15
Identities = 34/52 (65%), Positives = 42/52 (80%)
Frame = +1
Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 360
+K+ +EAKQPNSA+ KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 31.5 bits (68), Expect = 0.21
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -2
Query: 233 GCLASTHNFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRF 54
GC A T DA S+ T ++P H+ + +G S A ++ VLAR ANT +
Sbjct: 165 GCWALTEPNHGSDASSL--ITTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNANTKQL 222
Query: 53 THY 45
+
Sbjct: 223 NGF 225
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 30.7 bits (66), Expect = 0.37
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 26 RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 139
R+C R +G +GY HG + + SSR + R G+ +P
Sbjct: 184 RACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584
Length = 144
Score = 29.5 bits (63), Expect = 0.86
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 9 NSARGADRVRAIVMGKPRGIRTARKHVNHRR 101
+ A GADR R +V G PR R AR+H RR
Sbjct: 43 SEAAGADRRRPVV-GDPRRRRAARQHGEDRR 72
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 199 SSKKLCVEAKQPNSALRKCVRVQLIKNGKKVT 294
S+K +C+E QP L+K V ++I G +++
Sbjct: 1974 SNKPVCIECSQPLRKLQKIVMTKIINKGLQIS 2005
>02_05_0775 +
31681720-31681953,31682106-31682246,31682357-31682428,
31682513-31682590,31682683-31682736,31682862-31682963,
31683112-31683189,31683322-31683391,31683592-31683662,
31683826-31683918,31684029-31684109
Length = 357
Score = 29.1 bits (62), Expect = 1.1
Identities = 22/87 (25%), Positives = 36/87 (41%)
Frame = +1
Query: 70 ARRAST*IIVASSDGPTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLCVEAKQPNSALR 249
A T + +A++ R++ +W D R S AS + ++ SAL
Sbjct: 28 ASMRQTYLDLAAAAVAARSASCTSWA-DAMRASSPTRSSRSASDVDEFTAWVRKHPSALS 86
Query: 250 KCVRVQLIKNGKKVTAFVPRDGCLNHI 330
K + GKK+ F+ DG L+ I
Sbjct: 87 KFEEIAAKSRGKKIVMFMDYDGTLSPI 113
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 17 TRSRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 124
++ R+ S+Y+ G +S Y GA ++ ++ +QG
Sbjct: 280 SKQRTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315
>04_03_1015 - 21734381-21736534
Length = 717
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 235 NSALRKCVRVQLIKNGKKVTAFVPRDG 315
+SAL C + L+ +GK++ A++ R+G
Sbjct: 492 SSALAACANIFLLNHGKQIHAYMIRNG 518
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 99 REQRWADKEFKKAHMGTRWKANPFGG 176
R +RW DK+ K R KA+PF G
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPFCG 270
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 115 PTRNSKKPTWVRDGRRTPSVVHL 183
PT+++ +PTWV + P+V+ L
Sbjct: 65 PTQHAPEPTWVNPSKPKPTVLSL 87
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 154 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRI 65
H+V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 26.2 bits (55), Expect = 8.1
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 16 HEEPIVFALS*WVNLGVFARRAST*IIVASSDGPTRNSKKPTWVRDGRRTPSVVHLMLRA 195
HE IVF L WV +G+ + +++ T TW++ RRT + +
Sbjct: 87 HERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTLQ----TWIKRSRRTFKEIPITQIP 142
Query: 196 SSSKKL 213
S+SK +
Sbjct: 143 SASKDI 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,920,912
Number of Sequences: 37544
Number of extensions: 263069
Number of successful extensions: 730
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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