Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C10
(369 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 101 5e-22
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 101 5e-22
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 101 5e-22
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 48 9e-06
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 36 0.054
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 36 0.054
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 36 0.054
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 36 0.054
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 36 0.054
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 36 0.054
X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein. 30 2.7
DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 2.7
BC016330-1|AAH16330.1| 352|Homo sapiens RAD51AP1 protein protein. 30 2.7
BC006992-1|AAH06992.1| 335|Homo sapiens RAD51 associated protei... 30 2.7
AL162586-6|CAI39765.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 2.7
AL157935-2|CAI12605.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 2.7
AK096930-1|BAC04902.1| 352|Homo sapiens protein ( Homo sapiens ... 30 2.7
AF006259-1|AAC39554.1| 335|Homo sapiens Rad51-interacting prote... 30 2.7
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 101 bits (243), Expect = 5e-22
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 369
+K+ VEAKQPNSA+RKCVRVQLIKNGKK+TAFVP DGCLN IEENDEV VAGFGR
Sbjct: 53 EKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGR 107
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3
Query: 48 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 212
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKV
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV 55
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 101 bits (243), Expect = 5e-22
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 369
+K+ VEAKQPNSA+RKCVRVQLIKNGKK+TAFVP DGCLN IEENDEV VAGFGR
Sbjct: 53 EKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGR 107
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3
Query: 48 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 212
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKV
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV 55
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 101 bits (243), Expect = 5e-22
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 369
+K+ VEAKQPNSA+RKCVRVQLIKNGKK+TAFVP DGCLN IEENDEV VAGFGR
Sbjct: 53 EKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGR 107
Score = 95.1 bits (226), Expect = 6e-20
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3
Query: 48 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 212
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKV
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV 55
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 48.0 bits (109), Expect = 9e-06
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = +1
Query: 298 FVPRDGCLNHIEENDEV*VAGFGR 369
FVP DGCLN IEENDEV VAGFGR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGR 24
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 35.5 bits (78), Expect = 0.054
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 226 KQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 360
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG 112
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 35.5 bits (78), Expect = 0.054
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 226 KQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 360
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG 112
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.5 bits (78), Expect = 0.054
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 226 KQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 360
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG 112
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.5 bits (78), Expect = 0.054
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 226 KQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 360
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG 112
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.5 bits (78), Expect = 0.054
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 226 KQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 360
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG 112
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 35.5 bits (78), Expect = 0.054
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 226 KQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 360
K+PNSA RKC RV+L G++ F+P +G + ++E+ V V G
Sbjct: 71 KKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQEHQIVLVEG 112
>X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein.
Length = 625
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 179 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 57
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 179 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 57
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>BC016330-1|AAH16330.1| 352|Homo sapiens RAD51AP1 protein protein.
Length = 352
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 115 PTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLCVEAKQPNSALR 249
P+ SKKP WV P R+SSS + V K PN +LR
Sbjct: 295 PSAESKKPKWV------PPAASGGSRSSSSPLVVVSVKSPNQSLR 333
>BC006992-1|AAH06992.1| 335|Homo sapiens RAD51 associated protein 1
protein.
Length = 335
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 115 PTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLCVEAKQPNSALR 249
P+ SKKP WV P R+SSS + V K PN +LR
Sbjct: 278 PSAESKKPKWV------PPAASGGSRSSSSPLVVVSVKSPNQSLR 316
>AL162586-6|CAI39765.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 179 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 57
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AL157935-2|CAI12605.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 179 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 57
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AK096930-1|BAC04902.1| 352|Homo sapiens protein ( Homo sapiens
cDNA FLJ39611 fis, clone SKNSH2008940, highly similar to
Homo sapiens Rad51-interacting protein mRNA. ).
Length = 352
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 115 PTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLCVEAKQPNSALR 249
P+ SKKP WV P R+SSS + V K PN +LR
Sbjct: 295 PSAESKKPKWV------PPAASGGSRSSSSPLVVVSVKSPNQSLR 333
>AF006259-1|AAC39554.1| 335|Homo sapiens Rad51-interacting protein
protein.
Length = 335
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 115 PTRNSKKPTWVRDGRRTPSVVHLMLRASSSKKLCVEAKQPNSALR 249
P+ SKKP WV P R+SSS + V K PN +LR
Sbjct: 278 PSAESKKPKWV------PPAASGGSRSSSSPLVVVSVKSPNQSLR 316
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,004,378
Number of Sequences: 237096
Number of extensions: 1394682
Number of successful extensions: 7261
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7241
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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