Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C10
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   100   3e-22
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    33   0.048
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    26   7.3  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  100 bits (240), Expect = 3e-22
 Identities = 45/55 (81%), Positives = 51/55 (92%)
 Frame = +1

Query: 205 KKLCVEAKQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGR 369
           +K+ VEAKQPNSA+RKCVRVQLIKNGKK+TAFVP DGCLN +EENDEV V+GFGR
Sbjct: 53  EKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGR 107



 Score =  100 bits (239), Expect = 4e-22
 Identities = 42/55 (76%), Positives = 49/55 (89%)
 Frame = +3

Query: 48  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 212
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKI 55


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 33.5 bits (73), Expect = 0.048
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = +1

Query: 226 KQPNSALRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAG 360
           K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +V V G
Sbjct: 89  KKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLVKG 130


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 292 TAFVPRDGCLNHIEEN 339
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 45  VMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG 173
           V  K   +  + KH  H  +  + D  FKK   GTRW    +G
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYG 275


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 20  RSRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSPHGYEMEGE 163
           R  + + Y+NG TSG + G++  E   +    ++  ++S +  E EGE
Sbjct: 622 RETAFNHYKNG-TSGTTAGSEILEKKKKKKDKKKKNKRSDNNSESEGE 668


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 92  SSSRAAMGRQGIQKSPHGYEMEGEPLRWCI 181
           S SR+   R+   +SP   E   +P RWC+
Sbjct: 579 SRSRSPPRRRRRSRSPRRREEHTDPTRWCV 608


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 ASSDGPTRNSKKPTWVRDGRR 162
           A + GP +  KKPT V +GRR
Sbjct: 33  APTKGPVQPQKKPTTVDNGRR 53


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 ASSDGPTRNSKKPTWVRDGRR 162
           A + GP +  KKPT V +GRR
Sbjct: 33  APTKGPVQPQKKPTTVDNGRR 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,703,056
Number of Sequences: 27780
Number of extensions: 207703
Number of successful extensions: 553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)