Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C09
         (159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    25   1.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   2.4  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    22   9.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    22   9.5  

>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 7   GIYALPLSIVLRGSMSP 57
           G+Y L +S+++ G MSP
Sbjct: 65  GVYGLVMSVLIAGDMSP 81


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 129 PENFQKNKILGPLIFISVPLI 67
           PENF+  K  G  +FIS P +
Sbjct: 873 PENFEFKKKSGGKVFISYPCV 893


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 99  LRFYSSGSFQVCNHYNIG 152
           LRF  SGS  +  HY +G
Sbjct: 125 LRFRKSGSKMLAGHYLLG 142


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 10  IYALPLSIVLRGSMSPSTLDKGHGDKY*WP 99
           I A+ L +V+  S      D G G  Y WP
Sbjct: 88  IIAILLLLVILHSFQGRPQDNGCGKSYVWP 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,429
Number of Sequences: 5004
Number of extensions: 9443
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)