Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C08
         (316 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   2.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   3.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   4.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   9.4  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    19   9.4  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    19   9.4  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    19   9.4  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 195 LSHNKLVNVV 224
           +SHNKL+N+V
Sbjct: 197 MSHNKLINLV 206


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 124 PDLLMLEKKSMESNKNICSFS 62
           PD++ +E +  +S K +C+ S
Sbjct: 288 PDVIKVEPELSDSEKTLCNGS 308


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 172 ILILLCVSNKNVRVNQPDLLM---LEKKSMESNKNI 74
           +LIL C+  KN+  N   L++   ++  S+ + K +
Sbjct: 253 LLILYCIIAKNLMSNAATLVLNKHIDNISLRARKQV 288


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 310 LYDAGGVYRILPIRVLDQ 257
           LYD+  +  I+P  VLD+
Sbjct: 112 LYDSDIIQDIVPQNVLDE 129


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 306 MMLAACIGSSQFGYWTKCRRMPRK 235
           M  A C+   Q   W + RRM  K
Sbjct: 256 MAHALCLTERQIKIWFQNRRMKLK 279


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 156 AFQIRMCALINLI 118
           AFQ+ MC  +N +
Sbjct: 155 AFQVLMCTSMNFV 167


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 306 MMLAACIGSSQFGYWTKCRRMPRK 235
           M  A C+   Q   W + RRM  K
Sbjct: 38  MAHALCLTERQIKIWFQNRRMKLK 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,422
Number of Sequences: 336
Number of extensions: 980
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)