Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C08
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   0.67 
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   0.67 
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   2.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   4.7  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    24   4.7  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    24   6.3  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    23   8.3  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    23   8.3  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 124  PDLLMLEKKSMESNKNICSFSFHLTHYELLEPSSLTRLTLV 2
            PD   LEK      +++ SFS    H E+L+ +  +RLT +
Sbjct: 1000 PDSWFLEKLPCPLTQSLQSFSHLSNHIEVLDSTRQSRLTFL 1040


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 0.67
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 133 VNQPDLLMLEKKSMESNKNICSFSFHLTHYELLEP 29
           V Q    +L+  S+++NK+IC+F  H     ++ P
Sbjct: 554 VKQEISQLLKDFSLKANKDICNFRIHSNGVNIISP 588


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 166 ILLCVSNKNVRVN-QPDLLMLEKKSMESNKNICSFSFHLTHYELLEPSSLTRLTLV 2
           +L CV    +  N  PDLL    +++   K + S    L  Y L +P+S T +T V
Sbjct: 351 LLECVPLGTIEANGHPDLLPALIRALGRAKRLNSCFQLLERYNLSDPTSDTSMTNV 406


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 121 DLLMLEKKSMESNKNICSFSFHLTHYELLEPSSL 20
           DL  + K   ++  NIC+F+    +  L EPS+L
Sbjct: 426 DLSNILKVDFQNGHNICTFAKWCINNNLDEPSNL 459


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 136 RVNQPDLLMLEKKSMESNKNICSFSFHLTHYELLE 32
           R+   DLL L   +++S+ N  SFS+HL+    +E
Sbjct: 278 RIESTDLL-LSIGALKSDFNTGSFSYHLSQKNAVE 311


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 175 KILILLCVSNKNVRVNQPDLLMLEK 101
           K++ L C    N  +N PDL+ + K
Sbjct: 367 KVMALFCEFPSNPLLNSPDLVRIRK 391


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 AFSGTWSNTRIGRILYTPPAS 305
           A +G+WS T  G +L   PAS
Sbjct: 281 ALTGSWSMTPSGEMLIVYPAS 301


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 243 AFSGTWSNTRIGRILYTPPASYS 311
           AF+ TW +    ++L  P ++YS
Sbjct: 39  AFATTWQSINASQLLQIPSSTYS 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,137,052
Number of Sequences: 5004
Number of extensions: 17614
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)