Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C08
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409...    29   0.58 
02_05_1246 - 35226759-35226860,35227521-35227715,35227804-352283...    26   5.4  
08_02_0893 + 22327485-22327671,22327756-22328627                       26   7.1  
12_02_0123 - 13930138-13932471                                         25   9.4  
11_06_0040 + 19532262-19532910,19533509-19533540                       25   9.4  

>12_01_1045 -
           10739396-10739402,10739968-10740239,10740361-10740941,
           10741566-10742586
          Length = 626

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 306 MMLAACIGSSQFGYWTKCRRMPRKPFPTLH*QAYYA 199
           ++ AA  G+ +  Y+  CR   R+P PT+  +A++A
Sbjct: 78  LLAAASFGACEVFYFLFCREDAREPLPTMTARAFHA 113


>02_05_1246 -
           35226759-35226860,35227521-35227715,35227804-35228363,
           35229299-35229476
          Length = 344

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 160 LCVSNKNVRVNQPDLLMLE 104
           LC ++K + +NQP+LL LE
Sbjct: 35  LCATSKEIFLNQPNLLELE 53


>08_02_0893 + 22327485-22327671,22327756-22328627
          Length = 352

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 160 LCVSNKNVRVNQPDLLMLE 104
           LCV+ K++ ++QP+LL LE
Sbjct: 38  LCVTGKDIFLSQPNLLELE 56


>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 275 NSGIGPSAGECPVNRFRHYIDKLIMRQSRDDGIENLNLTMRF 150
           N  +    G  P +  +  +  L+    RD G+E L++ +RF
Sbjct: 69  NPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLHVALRF 110


>11_06_0040 + 19532262-19532910,19533509-19533540
          Length = 226

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 246 FSGTWSNTRIGRILYTPPAS 305
           F+ TW  T    I+YTPPA+
Sbjct: 28  FTCTWPTTCQSAIVYTPPAA 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,444,613
Number of Sequences: 37544
Number of extensions: 114111
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)