Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C08
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-10|CAA95838.3|  491|Caenorhabditis elegans Hypothetical p...    27   2.8  
U97009-6|AAC69028.2|  133|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    26   5.0  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    26   5.0  
Z70267-4|CAA94210.1|  314|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U97009-8|AAC69032.1|  534|Caenorhabditis elegans Udp-glucuronosy...    26   6.6  
U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>Z71266-10|CAA95838.3|  491|Caenorhabditis elegans Hypothetical
           protein R06C7.7 protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = +3

Query: 213 VNVVSETVYGAFSGTWSNTRIGRILYTPPASYSD 314
           +N++S+ ++G  +   S+  + +I+Y PP + ++
Sbjct: 105 LNILSDDMFGLANAAMSDPNMDKIVYAPPLAINE 138


>U97009-6|AAC69028.2|  133|Caenorhabditis elegans Hypothetical
           protein T19H12.12 protein.
          Length = 133

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 181 VLKILILLCVSNKNVRVNQPDLLMLEK-KSMESNKNICSFSFHLTHYELL 35
           + K+  ++     +V + QP  + L+    +  NKNI   ++H THYE L
Sbjct: 36  ISKVADIIADHGHHVTLFQPYHIALKNLDGLVKNKNIEILNYHPTHYEEL 85


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 151 SNKNVRVNQPDLLMLEKKSMESNKNICSFSFHLTHYELLEPSS 23
           S   +RV   DL      +  +N N+CS + +LT ++   P++
Sbjct: 752 SKMKIRVPPTDLPTEIASNCSNNPNVCSENTNLTQFQKYHPNT 794


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
           protein F15D4.7 protein.
          Length = 2268

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 151 SNKNVRVNQPDLLMLEKKSMESNKNICSFSFHLTHYELLEPSS 23
           S   +RV   DL      +  +N N+CS + +LT ++   P++
Sbjct: 752 SKMKIRVPPTDLPTEIASNCSNNPNVCSENTNLTQFQKYHPNT 794


>Z70267-4|CAA94210.1|  314|Caenorhabditis elegans Hypothetical
           protein K04C1.3 protein.
          Length = 314

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 148 NKNVRVNQPDLLMLEKKSMESNKNICSFSFH-LTHYELLEPSSLT 17
           NK   V     ++L+KK+++ N N  S SFH      L+ P+ LT
Sbjct: 207 NKRNNVVTVKPMLLQKKTVQPNVNRPSISFHQCLAQALIFPTDLT 251


>U97009-8|AAC69032.1|  534|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein12 protein.
          Length = 534

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 181 VLKILILLCVSNKNVRVNQPDLLMLEK-KSMESNKNICSFSFHLTHYELL 35
           + K+  ++     +V + QP  + L+    +  NKNI   ++H THYE L
Sbjct: 37  ISKMADIIADHGHHVTLFQPYHIALKNLDGLVKNKNIEILNYHPTHYEEL 86


>U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical
           protein K08B5.2 protein.
          Length = 303

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 175 KILILLCVSNK-NVRVNQPDLLMLEKKSMESNKNICSFSFH 56
           +I +  CV  K NVR++ PD+  L  K +E + +I   +F+
Sbjct: 197 EIYLTKCVKAKFNVRLSSPDIPHLIMKFIECHPHIQEIAFN 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,290,769
Number of Sequences: 27780
Number of extensions: 97568
Number of successful extensions: 225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)