Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C08
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   2.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   2.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 165 IKIFNTVVS*LSHNKLVNVVSETVYGAFSG 254
           I +FN  V  L   + V ++ E +YGA  G
Sbjct: 339 IILFNPEVRGLKSIQEVTLLREKIYGALEG 368


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 165 IKIFNTVVS*LSHNKLVNVVSETVYGAFSG 254
           I +FN  V  L   + V ++ E +YGA  G
Sbjct: 339 IILFNPEVRGLKSIQEVTLLREKIYGALEG 368


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 248 ECPVNRFRH 222
           ECP+ +F+H
Sbjct: 264 ECPIGKFKH 272


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 163  RLRFSIPSSLDCRIISLS 216
            RLR++IPS+ D  I S S
Sbjct: 1199 RLRYAIPSAGDISIESKS 1216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,103
Number of Sequences: 438
Number of extensions: 1188
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)