Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C07
(285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 29 0.098
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 0.69
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 27 0.69
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 0.92
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 2.8
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 2.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 24 3.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 4.9
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 24 4.9
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 24 4.9
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr... 23 6.5
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 23 6.5
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 23 6.5
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 23 8.5
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 23 8.5
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 23 8.5
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 23 8.5
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 23 8.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 23 8.5
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 29.5 bits (63), Expect = 0.098
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 74 TVHDHHHSHRSTTEGPWQTQHRKSQSL---DVTATRRDRQHSQPVKE 205
TV +HH ++ P + QH + +SL T T+ R+ S P K+
Sbjct: 670 TVSNHHRKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQ 716
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 0.69
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Frame = -3
Query: 277 YIVHFQLQLVFRVRRIREYTAESALFDWLRMLPISSSGCYVERLGLT--VLRLPWSFRCA 104
++V + +VF V + + +AL W +++ + R + +L + W F CA
Sbjct: 181 FVVEYYAPIVFYVFNLMGFFL-AALHPWTKVVRGDGNAATDGRFKASSVLLAIAWVFACA 239
Query: 103 SVRMVMVVHGIDRVA-----VLMSVAVAPR 29
+ V+ +DR V+M +++ PR
Sbjct: 240 MFIVYSFVYKLDRRGRWVGMVIMMISILPR 269
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 0.69
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 56 DRNTVYTV-HDHHHS-HRSTTEGPWQTQHRKSQSLDVTATRRDRQHSQPVK 202
DR T ++ H HHHS HR + G R S +R +R +P++
Sbjct: 19 DRETNHSRRHRHHHSRHRESKHGRHDRSERPSSREAGDRSRHERFSKEPLE 69
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 0.92
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 104 STTEGPWQTQHRKSQSLDVTATRRDRQHSQPVKESR 211
ST PW+ + S + +A R QH +P S+
Sbjct: 100 STNNKPWRGDNTSKPSANSSAERTSSQHQKPETSSQ 135
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 2.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -1
Query: 135 CCVCHGPSVVLLCE 94
C CHGP L CE
Sbjct: 266 CSACHGPGNFLCCE 279
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 24.6 bits (51), Expect = 2.8
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +2
Query: 26 GTRGDRNRHK-DRNTVYTVHDHHHSHRSTTEGPWQTQHRKSQSLDVTATRRDRQHSQPVK 202
G+ N H+ D++ + H HHH H H S D ++ +Q+ P
Sbjct: 280 GSTNHHNNHESDKDLHHEGHHHHHHHH---------HHHHSHDDDPSSPAEKKQNHVPSP 330
Query: 203 ESRFRCIFPYPPNSEYE 253
+ + P P + +
Sbjct: 331 SEKIQDHVPSPSEKKQD 347
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.2 bits (50), Expect = 3.7
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +2
Query: 53 KDRNTVYTVHDHHHSHRSTTEGPWQTQHRKSQSLDVTATRRDRQHSQPVKESRFRCIFP- 229
+ ++T HDH HSH + + + + +K + + P + +R P
Sbjct: 713 RKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGPPPQPARPESTRPA 772
Query: 230 -YPPNSEY 250
PP+S +
Sbjct: 773 LAPPSSSH 780
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 23.8 bits (49), Expect = 4.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 216 RNLLSLTGCECCLSLLVAVTS 154
++LLSL ECCL +L TS
Sbjct: 70 QSLLSLDIFECCLQILGIATS 90
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 23.8 bits (49), Expect = 4.9
Identities = 12/55 (21%), Positives = 25/55 (45%)
Frame = +2
Query: 101 RSTTEGPWQTQHRKSQSLDVTATRRDRQHSQPVKESRFRCIFPYPPNSEYELELK 265
R E + + +K Q V R+ +++ + ++ + + Y + EY ELK
Sbjct: 176 RKLKEKEEEARRQKEQQQGVVQVRQQKEYLKELERQKTVPLARYEDDPEYNKELK 230
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 23.8 bits (49), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 80 HDHHHSHRSTTEGPWQTQHR-KSQSLD 157
++HH +HR + G W + SQSLD
Sbjct: 150 YNHHSNHRLASPGWWYGEDSCISQSLD 176
>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 458
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 180 LSLLVAVTSRDWDLRCCVCHGPSVVLLCE 94
L ++A TS D ++CC HG + + E
Sbjct: 364 LMKILAATSEDELVQCCKMHGLKIEYIGE 392
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 23.4 bits (48), Expect = 6.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +2
Query: 155 DVTATRRD--RQHSQPVKESRFRCIFPYPPNS 244
D+ AT D Q + RFR + YPPN+
Sbjct: 557 DLMATSSDVVTQQVTTINNLRFRVLDTYPPNN 588
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 185 HSQPVKESRFRCIFPYPPNSEYELELKVDDIVI 283
+ +P E P P N Y L L +DD++I
Sbjct: 156 YQEPAFEKLLPDPLPEPYNRPYTLVLSLDDLLI 188
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.0 bits (47), Expect = 8.5
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 281 SLYRPLSTPARIPSSEDTGIYSGICSL*LAANVAYLF 171
+++RP P +P+ T + G+ L +A+ Y+F
Sbjct: 434 NIFRPQDAPKYVPALGITAGFGGLGILLVASISVYMF 470
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 23.0 bits (47), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 181 ATFAASQREQIPLYIPVSSELGIRAGVESGRYSD 282
AT E + L I ++ LG+ GV +GR S+
Sbjct: 304 ATEFGLSNEMLSLIILINFPLGLALGVYTGRISN 337
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 266 LSTPARIPSSED--TGIYSGICSL*LAANVAYLF*WLL 159
+ST P E G++ G+C++ N+ Y+ WL+
Sbjct: 340 VSTICFYPDGESIVVGMFYGLCAIYETKNLQYVSSWLI 377
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 138 VSPNLST*QPLEEIGNIRSQSK 203
V+ + QPLEEIG I Q K
Sbjct: 247 VNNEIGVCQPLEEIGKICRQKK 268
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 23.0 bits (47), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 123 HGPSVVLLCEW*WSCTV*TVLRSLCRLRSPLVPN 22
H P ++LC + + V R L +RSP VP+
Sbjct: 289 HKPQYLVLCVYRSLIYIGDVHRYLAEVRSPNVPD 322
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 47 RHKDRNTVYTVHDHHHS 97
R D N +TV D HHS
Sbjct: 481 RRSDSNRTWTVIDPHHS 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,257,817
Number of Sequences: 5004
Number of extensions: 24023
Number of successful extensions: 77
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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