Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C06
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    27   0.25 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   1.3  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    25   1.8  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    24   2.3  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    24   3.1  
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    24   3.1  
SPAC17C9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   3.1  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    23   5.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    23   7.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    23   7.1  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    23   7.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   7.1  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    23   7.1  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    22   9.4  
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    22   9.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    22   9.4  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    22   9.4  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    22   9.4  

>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +3

Query: 9   LKRVLN---KRPQWNVTLEEPVAGNYYPVVNEIYIENDDQRFTVLTDR 143
           ++RVL    +RP + V +E+P+ GN +     + I+N D  FT +  R
Sbjct: 236 IQRVLTCDCQRPSYTVYIEDPIIGNGFSSAWNL-IKNSDGIFTPVESR 282


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 120  FDRHSQYIFH*QLDNNSPQRVLPT*HSTEVFY 25
            + RH     H  LD NS   ++ T HS +VF+
Sbjct: 1985 YPRHVPTDSHGSLDENSLGELVTTLHSLDVFF 2016


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 235 SSPTPNASSWSNLLCTISWISPSTKDAPPAARSVN 131
           S P P +   + LL ++S +S +  +A P ARS +
Sbjct: 410 SRPHPLSQRVAELLYSLSMLSVNVVEAEPVARSAS 444


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 235 SSPTPNASSWSNLLCTISWISPSTKDAPPAARSVNTVNL*SSFSI 101
           S+ TP   + SNLLC ++ I    +D+PP     NT     SFS+
Sbjct: 49  STSTPFVENCSNLLCDLASI---VEDSPPTL--TNTSLSPHSFSL 88


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 3   TRLKRVLNKRPQWNVTLEEPVAGNYYPVVNEIYIENDDQRFTVLTDR 143
           T + +V+ K  +    LE P++ N   +++   I +D+Q     T+R
Sbjct: 780 TSVVKVICKMLKICKKLECPISQNVIDIIHRASITSDEQTILTFTER 826


>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 168 EGEIQLMVHRRLLHDDAF 221
           +GEI L  ++  LHDD+F
Sbjct: 135 KGEIMLKANKGWLHDDSF 152


>SPAC17C9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 94

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 96 FH*QLDNNSPQRVLPT*HS 40
          FH Q D  SP+R+ PT +S
Sbjct: 5  FHYQYDRASPERLKPTIYS 23


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 39  WNVTLEEPVAGNYY 80
           ++V +EEP+ GN+Y
Sbjct: 316 FSVVVEEPIYGNFY 329


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 45   VTLEEPVAGNYYPVVNEIYIEND 113
            +   E +  +++P+V EI +E+D
Sbjct: 1044 IDAHEDLESSFFPMVKEIMLESD 1066


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 226 TPNASSWSNLLCTISWISPSTKDA 155
           TP+A  W+  L  + W   S+ D+
Sbjct: 172 TPDAEGWNEFLKCLEWAVLSSLDS 195


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 66  AGNYYPVVNEIYIEN 110
           +GN+ P +N I+I+N
Sbjct: 380 SGNFIPSLNSIFIDN 394


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 209 VEQSPMHHQLDL 174
           +E  P+HHQLD+
Sbjct: 587 IEPVPVHHQLDI 598


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 78  YPVVNEIYIENDDQRFTVLTDR 143
           YP++ E+++  DD+    + D+
Sbjct: 303 YPIIRELHLNVDDEEIREVCDQ 324


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 111 HSQYIFH*QLDNNSPQRVLPT*HSTEVFY 25
           + +++F+ Q D N      P+ + + VFY
Sbjct: 139 NKRFLFNSQSDGNKKNETFPSTNYSNVFY 167


>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 27  KRPQWNVTLEEPVAGNY 77
           KRP+ N+T EE ++  Y
Sbjct: 193 KRPELNITPEEVLSSGY 209


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 143  SVSQHRKPLIVILNIYFIDNWIIIPRN 63
            S S  RKPL   ++++  D W+ I  N
Sbjct: 1549 SNSPLRKPLYSFMDLHANDTWMYILNN 1575


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 98  YFIDNWIIIPRNGFF 54
           +F  +W +I R GFF
Sbjct: 243 FFATSWFLIQRPGFF 257


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 226 TPNASSWSNLLCTISWISPSTKD 158
           T N     +L CT  WISP  K+
Sbjct: 57  TRNLDYIKSLGCTAIWISPIVKN 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,015,546
Number of Sequences: 5004
Number of extensions: 17913
Number of successful extensions: 59
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)