Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C06
(235 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 93 3e-20
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 84 1e-17
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 50 3e-07
02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110 29 0.53
05_07_0238 + 28597399-28598286 29 0.70
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 27 1.6
03_01_0093 - 745434-746057,746492-747112,747222-747791,747870-74... 26 3.7
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 25 6.5
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 25 6.5
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 25 8.6
09_03_0209 + 13505900-13506277,13507296-13508063,13508412-13509131 25 8.6
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130... 25 8.6
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 25 8.6
02_05_1146 - 34440647-34441674,34442138-34443896 25 8.6
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 93.1 bits (221), Expect = 3e-20
Identities = 37/75 (49%), Positives = 56/75 (74%)
Frame = +3
Query: 9 LKRVLNKRPQWNVTLEEPVAGNYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLM 188
+KR+ + R +W + + +P+AGNYYPV IY+E+ + ++L DR+ GGAS+ +G+I+LM
Sbjct: 720 IKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGSRELSILVDRSVGGASIKDGQIELM 779
Query: 189 VHRRLLHDDAFGVGE 233
+HRRLLHDD GV E
Sbjct: 780 LHRRLLHDDGRGVAE 794
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 84.2 bits (199), Expect = 1e-17
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +3
Query: 9 LKRVLNKRPQWNVTLEEPVAGNYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLM 188
L+RV N R W++ L +PVAGNYYPV IY+ + +VL D A G +S+ +G+I++M
Sbjct: 712 LERVRNHRDDWDLNLSQPVAGNYYPVNQGIYVADGKYELSVLVDHAVGASSIQDGQIEVM 771
Query: 189 VHRRLLHDDAFGVGE 233
+HRRL DD GVGE
Sbjct: 772 LHRRLSADDGRGVGE 786
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 49.6 bits (113), Expect = 3e-07
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +3
Query: 60 PVAGNYYPVVNEIYIEND-DQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGE 233
P+ GNYYP+ + ++++ RF+V + ++ G ASL G +++M+ RRL DD G+G+
Sbjct: 917 PLQGNYYPMPSLAFLQDSLGNRFSVHSKQSLGAASLKNGWLEIMLDRRLTQDDGRGLGQ 975
>02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110
Length = 97
Score = 29.1 bits (62), Expect = 0.53
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 235 SSPTPNASSWS---NLLCTISWISPSTKDAPPAARSVNTVNL 119
S P P AS WS LC + WI+P +AP + + V++
Sbjct: 54 SQPPPPASRWSLISTFLCLLKWIAP--LEAPHQIQRIEQVDI 93
>05_07_0238 + 28597399-28598286
Length = 295
Score = 28.7 bits (61), Expect = 0.70
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 235 SSPTPNASSWSNLLCTISWISPSTKDAPPAARSVNTVN 122
S +P++SS ++ CT+S +PS++ A P A + N
Sbjct: 38 SPSSPSSSSTGSVDCTLSLGTPSSRRAEPVAAAAPAAN 75
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 229 PTPNASSWSNLLCTISWISPSTK 161
PT S W CT SW+S ++K
Sbjct: 478 PTMKTSDWYTKSCTYSWVSLNSK 500
>03_01_0093 -
745434-746057,746492-747112,747222-747791,747870-747948,
748258-748331,748385-748387
Length = 656
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 132 LTDRAAGGASLVEGEIQLMVHRRLLH 209
+T R++GG S E EIQ MVH LH
Sbjct: 524 ITIRSSGGLS--EAEIQKMVHEAELH 547
>07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 63 VAGNYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHD 212
V G Y P + ND RF ++ D E E+ LMV R + D
Sbjct: 1608 VRGTYVPPFHVELYRNDQHRFKIVVDG--------ESEVDLMVQTRHMRD 1649
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 58 NPLRGIIIQLSMKYIL 105
NPL G+I+ LSM Y L
Sbjct: 381 NPLDGVIVPLSMNYAL 396
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 13 RGSLIKDLSGMSRWKNPLRGIIIQLSMKYILR 108
+G L+K L G W N L LS +YILR
Sbjct: 295 QGKLVKTLQGHGHWVNSL-----ALSTEYILR 321
>09_03_0209 + 13505900-13506277,13507296-13508063,13508412-13509131
Length = 621
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 226 TPNASSWSNLLCTISWISPSTKDAPPA 146
TP AS+ + + W+SP T + P+
Sbjct: 215 TPLASATEGIQAVLDWLSPQTPNFSPS 241
>07_01_0184 -
1304328-1304951,1305328-1305441,1305549-1305839,
1305930-1306238,1306326-1307048
Length = 686
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 51 LEEPVAGNYYPVV 89
LE+P AG+YYP+V
Sbjct: 218 LEDPDAGDYYPMV 230
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 185 QLDLAFN*RRSACSSVSQHRKPLIVILNI 99
QLDLA R A ++ Q ++ LIV+ ++
Sbjct: 2149 QLDLALESRNHAVETIKQSQQQLIVVASL 2177
>02_05_1146 - 34440647-34441674,34442138-34443896
Length = 928
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 6 RLKRVLNKRPQWNVTLEEPVAGNYYP 83
RL V+ +RP+WN T + N++P
Sbjct: 723 RLVEVVKERPRWNATAFFGRSKNHHP 748
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,871,906
Number of Sequences: 37544
Number of extensions: 121548
Number of successful extensions: 361
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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