Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C05
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   0.72 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   5.1  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    23   6.7  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   8.9  

>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 61  PFVFYSLKRLCSCFNKNNILPLFL 132
           PF+ Y  KR   CF+KN  L L +
Sbjct: 125 PFLIYVKKRFAECFDKNPDLCLIV 148


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 1   LNSARGNTVLVISFNFLALKPFVFYSLKRLCSCFNKNN 114
           ++SAR +T  V      AL  F++Y  + L  C+N  N
Sbjct: 494 VDSARYSTANVPPLCLDALLNFIYYFHEHLQPCYNDPN 531


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 116 YCLYSCK*ICYLEVW 160
           +C +SC+  CY++ W
Sbjct: 256 FCNHSCRPNCYVDKW 270


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 72  ENKWF*C*KIKTNNKNSV 19
           +NKWF     KTNN +S+
Sbjct: 128 DNKWFGVATQKTNNPHSI 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,028
Number of Sequences: 5004
Number of extensions: 13117
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)