Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C04
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   120   7e-29
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   117   7e-28
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   3.7  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   4.9  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    24   6.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   8.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    24   8.6  

>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  120 bits (289), Expect = 7e-29
 Identities = 55/92 (59%), Positives = 64/92 (69%)
 Frame = +2

Query: 35  MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 214
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 215 XXXMRHLKIVRRRFRNGFKEGKLTPKKAVASS 310
              M +LK V R F+NGF+ GK  P  AVA+S
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGK--PAAAVAAS 90


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  117 bits (281), Expect = 7e-28
 Identities = 51/84 (60%), Positives = 59/84 (70%)
 Frame = +2

Query: 35  MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 214
           MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA       
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 215 XXXMRHLKIVRRRFRNGFKEGKLT 286
              M +LK V R F+NGF+ GK T
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 71  NKTHTLCRRCGRSSYHIQKSKCAQCGYP 154
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 20  SISDKMTKGTSSFGKRRNKTHTLCRRCGRSS 112
           S S    KGTS     R+ T+ L R C +SS
Sbjct: 207 SYSINKKKGTSGGQATRHLTYALSRTCSQSS 237


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 24  FLTR*RRVPQVLVSVGIRHIHYAEDVVD 107
           F  +  +VP + VS G++H+++A    D
Sbjct: 352 FFQKTLKVPVLCVSPGLKHLYHAAQAYD 379


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 62   KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 154
            KR N    L  R       +Q ++C  CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 110 MIYHIFCIVYVS 75
           MIY +FC+ Y+S
Sbjct: 683 MIYFVFCVFYIS 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,686
Number of Sequences: 5004
Number of extensions: 25328
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)