Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C04
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 125 9e-30
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 122 9e-29
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 118 1e-27
12_01_0560 - 4532398-4532724,4532975-4533235,4533670-4533855,453... 31 0.28
04_04_0761 + 27841337-27841479,27842220-27842223,27842265-27843371 29 0.86
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 4.6
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 27 6.1
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292 27 6.1
07_03_1355 - 25976951-25977289,25977413-25977721 27 6.1
10_06_0178 + 11506814-11506862,11506973-11507181,11507221-11507283 26 8.1
04_04_1670 - 35227581-35228168,35228250-35228435,35228529-35228801 26 8.1
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 125 bits (302), Expect = 9e-30
Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +2
Query: 14 WLSISDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKA 193
WL S + KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 15 WLLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKA 74
Query: 194 XXXXXXXXXXMRHLKIVRRRFRNGFKEG-KLTPKKAVA 304
MR+++ V RRF++ F+EG + TP+K A
Sbjct: 75 IRRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAA 112
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 122 bits (294), Expect = 9e-29
Identities = 53/93 (56%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Frame = +2
Query: 35 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 214
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 215 XXXMRHLKIVRRRFRNGFKEG-KLTPKKAVASS 310
MR+++ V RRF++ F+EG + TP+K A++
Sbjct: 61 TGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 118 bits (285), Expect = 1e-27
Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Frame = +2
Query: 35 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 214
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 215 XXXMRHLKIVRRRFRNGFKEG-KLTPKKAVASS 310
MR+L+ V +RF++ F+EG + P+K A++
Sbjct: 61 TGRMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93
>12_01_0560 -
4532398-4532724,4532975-4533235,4533670-4533855,
4533922-4533936,4533941-4534246,4535032-4535135,
4535669-4535801
Length = 443
Score = 31.1 bits (67), Expect = 0.28
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = -3
Query: 164 IWLQDNHIAH-ISISECGKMIY 102
IWLQDN++ + + IS+CGK I+
Sbjct: 310 IWLQDNNVPYNVLISDCGKKIF 331
>04_04_0761 + 27841337-27841479,27842220-27842223,27842265-27843371
Length = 417
Score = 29.5 bits (63), Expect = 0.86
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 2 HEAFW-LSISDKMTKGTSSFGKRRNKTHTLCRRCGRSSYH 118
HE F L + D+M S FG H L R+C S+ H
Sbjct: 56 HEGFDNLGVRDEMIFSVSLFGSSHQSIHKLYRKCWSSNSH 95
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 59 GKRRNKTHTLCRRCGRSSYHIQKSK----CAQCGYPAAK 163
G+ + K T CR CG + K CA+CG+P K
Sbjct: 9 GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCK 46
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 14 WLSISDKMTKGTSSFGKRRNKTHTLC 91
WL+ D + G +S G R+ H LC
Sbjct: 523 WLTEEDLLGMGITSLGPRKKIAHALC 548
>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
Length = 222
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 47 TSSFGKRRNKTHTLCRRCGRSSYHIQKS 130
T +FG K HT CR CG +S++ +S
Sbjct: 26 TYTFGTHTAK-HTFCRVCGITSFYTPRS 52
>07_03_1355 - 25976951-25977289,25977413-25977721
Length = 215
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 102 PHLLHSVCVLFRRLPKLEVP 43
P LH C+L RRLP VP
Sbjct: 17 PSELHRRCILVRRLPSCTVP 36
>10_06_0178 + 11506814-11506862,11506973-11507181,11507221-11507283
Length = 106
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 84 HYAEDVVDHLTTFRNRNVRNVV 149
H A D++ +F NR VRN++
Sbjct: 78 HLAHDIIHKFCSFHNRGVRNLL 99
>04_04_1670 - 35227581-35228168,35228250-35228435,35228529-35228801
Length = 348
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 96 DVVDHLTTFRNRNVRNVVILQPN*DHTIGQSKLSA 200
DV L+ F+ RN+ NV ++ + H+IG+++ S+
Sbjct: 186 DVSTLLSAFQTRNLDNVDLVALSGGHSIGRARCSS 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,878,356
Number of Sequences: 37544
Number of extensions: 161633
Number of successful extensions: 395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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