Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C04
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...   114   2e-26
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...   105   1e-23
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    32   0.11 
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    32   0.15 
U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine re...    26   9.7  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score =  114 bits (275), Expect = 2e-26
 Identities = 49/86 (56%), Positives = 61/86 (70%)
 Frame = +2

Query: 35  MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 214
           MTKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGYP AK R+Y+W  K+       
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYPDAKKRTYNWGAKSIRRRTTG 60

Query: 215 XXXMRHLKIVRRRFRNGFKEGKLTPK 292
               RHL+ V  RFRNGF+EG  TPK
Sbjct: 61  TGRTRHLRDVNARFRNGFREG-TTPK 85


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score =  105 bits (252), Expect = 1e-23
 Identities = 46/86 (53%), Positives = 58/86 (67%)
 Frame = +2

Query: 35  MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 214
           MTKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA CGY  AK R+Y+W  K+       
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTG 60

Query: 215 XXXMRHLKIVRRRFRNGFKEGKLTPK 292
               RHL+ V  RFRNGF+    TPK
Sbjct: 61  TGRTRHLRDVNARFRNGFR--GTTPK 84


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 17  LSISDKMTKGTSS---FGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 160
           LS+ + + +  +S   + K    TH  C +CG+ + +    KC  CG P A
Sbjct: 78  LSLDESVAESANSIWTYNKNNFSTHHFCNKCGKVAQN--SKKCKHCGGPVA 126


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 17  LSISDKMTKGTSS---FGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAA 160
           LS+ + + +  +S   + K    TH  C +CG+ + +    KC  CG P A
Sbjct: 150 LSLDESVAESANSIWTYNKNNFSTHHFCNKCGKVAQN--SKKCKYCGGPVA 198


>U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical
           protein W03B1.9 protein.
          Length = 633

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 48  PQVLVSVGIRHIHYAEDVVDHLTTFRN 128
           PQ L  V +  I+  E+++DHL + +N
Sbjct: 166 PQTLTRVCLTGIYLTENLLDHLASLKN 192


>U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical
           protein W03B1.5 protein.
          Length = 581

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 48  PQVLVSVGIRHIHYAEDVVDHLTTFRN 128
           PQ L  V +  I+  E+++DHL + +N
Sbjct: 114 PQTLTRVCLTGIYLTENLLDHLASLKN 140


>AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine
           receptor, class h protein272 protein.
          Length = 326

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 110 MIYHIFCIVYVSYSDAYQNLRYPSSSCQKL 21
           ++Y  + + + SY+ AY N+ +   SC  L
Sbjct: 252 LLYFAYSVYFDSYNQAYNNISFIIISCHGL 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,812,536
Number of Sequences: 27780
Number of extensions: 147101
Number of successful extensions: 357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)