Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C03
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   2.6  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    24   4.6  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    24   4.6  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 220 SKAIFPILTRLLFYSSTSLGKPRFFNSACGDGSLPRNRLNTSLG*QLPP 74
           SK +F  +  L  Y+ST +G P        D SLP +   T    Q+PP
Sbjct: 347 SKRVFYSVYVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLENDQVPP 395


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 93  SDDNFHRPLRTCLCISDRRRS 31
           S D ++  LR CLC+S  +RS
Sbjct: 246 SQDTYN-VLRACLCVSPEKRS 265


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 6   RARTSDQDVISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPSPHALLKNLGLPKD 170
           R + S++D ++V   + +    +     PS+  RRF G+     +++ N  +P D
Sbjct: 269 RKKRSERDTLNVSTEFPEETKDLSEDTKPSKQARRFFGQ----KSIVSNRNMPTD 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,933
Number of Sequences: 5004
Number of extensions: 18838
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)