Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C03
(277 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82287-3|CAB05313.3| 772|Caenorhabditis elegans Hypothetical pr... 35 0.007
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 26 3.3
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 26 3.3
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 26 3.3
U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical pr... 26 3.3
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 26 3.3
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z92833-8|CAI70417.1| 719|Caenorhabditis elegans Hypothetical pr... 25 7.7
Z92833-7|CAB07381.1| 825|Caenorhabditis elegans Hypothetical pr... 25 7.7
Z92833-6|CAB07380.1| 823|Caenorhabditis elegans Hypothetical pr... 25 7.7
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 25 7.7
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 25 7.7
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 25 7.7
AL023842-10|CAI70400.1| 719|Caenorhabditis elegans Hypothetical... 25 7.7
AL023842-9|CAA19521.1| 825|Caenorhabditis elegans Hypothetical ... 25 7.7
AL023842-8|CAA19520.1| 823|Caenorhabditis elegans Hypothetical ... 25 7.7
AL023842-1|CAD54167.1| 503|Caenorhabditis elegans Hypothetical ... 25 7.7
AF364604-1|AAK62778.1| 719|Caenorhabditis elegans hypoxia-induc... 25 7.7
>Z82287-3|CAB05313.3| 772|Caenorhabditis elegans Hypothetical
protein ZK550.3 protein.
Length = 772
Score = 35.1 bits (77), Expect = 0.007
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 21 DQDVISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPSPHALLKNLGLPKDVEE 179
+ + + G+R + T L G E+F+RF+GR+PS A+ + P +++
Sbjct: 710 EDNEVQTGERLKTTILNRGSGDVAKELFKRFQGRNPSVGAICDHYAPPMAIQD 762
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 238 VQIAIKSKAIFPILTRLLFYSSTSLGKPR 152
++IA+ S A + R+LFYS + KP+
Sbjct: 485 IKIALPSCASHDVYLRILFYSKKAYDKPK 513
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 238 VQIAIKSKAIFPILTRLLFYSSTSLGKPR 152
++IA+ S A + R+LFYS + KP+
Sbjct: 485 IKIALPSCASHDVYLRILFYSKKAYDKPK 513
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 247 IGVVQIAIKSKAIFPILTRLLFYSSTSLGKPRFFNSACGDGSLPRN 110
+G+V + S I L R +F S + KP F S RN
Sbjct: 508 LGIVLVVFVSCIILGYLMRFIFLSYEAKTKPNVFGSTISSSGCIRN 553
>U37429-9|AAA79344.3| 796|Caenorhabditis elegans Hypothetical
protein F09E5.5 protein.
Length = 796
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 277 MLTTSVCRRCIGVVQIAIKSKAIFPILTRLLFYSSTS-LGKPR 152
M TSVCRR V ++ + +++ + FY+S LG P+
Sbjct: 322 MYHTSVCRRLREVASEHLEKSELVQLMSWIKFYASEDMLGHPK 364
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 238 VQIAIKSKAIFPILTRLLFYSSTSLGKPR 152
++IA+ S A + R+LFYS + KP+
Sbjct: 485 IKIALPSCASHDVYLRILFYSKKAYDKPK 513
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 38 RRSEIQ-RHVLSGRWKLSSERSVQAVPREGSVTACAVK 148
+R+EI+ R L+ R S +RSV++V RE + AVK
Sbjct: 344 KRAEIEHRKRLAARAVASGQRSVESVSRELFADSTAVK 381
>Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical
protein C08B6.2 protein.
Length = 430
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 237 FKSL*NRKPYFPF*LDYCFIPLRL 166
FK+L N+ P++ F +CF PL L
Sbjct: 69 FKNLSNQYPFYIFQFCHCFPPLTL 92
>Z92833-8|CAI70417.1| 719|Caenorhabditis elegans Hypothetical
protein F38A6.3e protein.
Length = 719
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 33 ISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPS 131
I GQ ++G SC PS+ RRF PS
Sbjct: 524 IKSGQVVYGDARSMGRSCDPSDSSRRFSALSPS 556
>Z92833-7|CAB07381.1| 825|Caenorhabditis elegans Hypothetical
protein F38A6.3b protein.
Length = 825
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 33 ISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPS 131
I GQ ++G SC PS+ RRF PS
Sbjct: 630 IKSGQVVYGDARSMGRSCDPSDSSRRFSALSPS 662
>Z92833-6|CAB07380.1| 823|Caenorhabditis elegans Hypothetical
protein F38A6.3a protein.
Length = 823
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 33 ISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPS 131
I GQ ++G SC PS+ RRF PS
Sbjct: 628 IKSGQVVYGDARSMGRSCDPSDSSRRFSALSPS 660
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -1
Query: 178 SSTSLGKPRFFNSACGDGSLPRNRLNTSLG*QLPPT 71
+ST L P F S C SLP L LPPT
Sbjct: 43 NSTMLLSPNFSPSPCPRRSLPSTPLPNGHRRSLPPT 78
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 111 FRGRDPSPHALLKNLGLPKDVEE*NNNRVRMGNMAFDFIAI 233
FR RDP + + G+ DVE N R G+ F F+ +
Sbjct: 162 FRFRDPDLKTMFEKFGVVSDVEIIFNER---GSKGFGFVTM 199
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 111 FRGRDPSPHALLKNLGLPKDVEE*NNNRVRMGNMAFDFIAI 233
FR RDP + + G+ DVE N R G+ F F+ +
Sbjct: 162 FRFRDPDLKTMFEKFGVVSDVEIIFNER---GSKGFGFVTM 199
>AL023842-10|CAI70400.1| 719|Caenorhabditis elegans Hypothetical
protein F38A6.3e protein.
Length = 719
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 33 ISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPS 131
I GQ ++G SC PS+ RRF PS
Sbjct: 524 IKSGQVVYGDARSMGRSCDPSDSSRRFSALSPS 556
>AL023842-9|CAA19521.1| 825|Caenorhabditis elegans Hypothetical
protein F38A6.3b protein.
Length = 825
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 33 ISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPS 131
I GQ ++G SC PS+ RRF PS
Sbjct: 630 IKSGQVVYGDARSMGRSCDPSDSSRRFSALSPS 662
>AL023842-8|CAA19520.1| 823|Caenorhabditis elegans Hypothetical
protein F38A6.3a protein.
Length = 823
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 33 ISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPS 131
I GQ ++G SC PS+ RRF PS
Sbjct: 628 IKSGQVVYGDARSMGRSCDPSDSSRRFSALSPS 660
>AL023842-1|CAD54167.1| 503|Caenorhabditis elegans Hypothetical
protein F38A6.3c protein.
Length = 503
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 33 ISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPS 131
I GQ ++G SC PS+ RRF PS
Sbjct: 308 IKSGQVVYGDARSMGRSCDPSDSSRRFSALSPS 340
>AF364604-1|AAK62778.1| 719|Caenorhabditis elegans hypoxia-induced
factor 1 protein.
Length = 719
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 33 ISVGQRYRDTFLAVGGSCHPSEVFRRFRGRDPS 131
I GQ ++G SC PS+ RRF PS
Sbjct: 524 IKSGQVVYGDARSMGRSCDPSDSSRRFSALSPS 556
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,302,533
Number of Sequences: 27780
Number of extensions: 112397
Number of successful extensions: 236
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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