Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C02
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 42 3e-05
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 1.6
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 2.1
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 25 2.8
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 25 2.8
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 3.7
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 25 3.7
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 3.7
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 3.7
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 25 3.7
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 24 4.8
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 24 4.8
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 6.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 24 6.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 24 6.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 24 6.4
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 24 6.4
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 24 6.4
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 23 8.5
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 23 8.5
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 23 8.5
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 23 8.5
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 23 8.5
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 8.5
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 41.5 bits (93), Expect = 3e-05
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Frame = +2
Query: 152 YIPPHLRNK---DSTSDPDLVLLKRQVKSVLNKLTGTNLHWACTSIERLYAGNSRNSV 316
Y+PP LR K D S+ D + L+R+++ LNKL+ N+ IE LY NSR+SV
Sbjct: 240 YVPPSLRKKLGGDKESE-DALRLRRKLQGSLNKLSIANISSIIKEIEVLYMENSRHSV 296
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 1.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 218 QVKSVLNKLTGTNLHWACT 274
QV SV++ T+LHWAC+
Sbjct: 239 QVNSVIDDDGHTSLHWACS 257
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 2.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 5 IRHEDDIEDLSGDENETNVKVDEKPDVWEDIYGRKRDKEGNVIKEEKG 148
+ H +I+ ++T+ V+ ED+Y + +D+ V+KE G
Sbjct: 247 LAHNKNIDPQIFQHSDTDNVVENSLQT-EDVYSQNQDESSEVVKELNG 293
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 2.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 196 WVRSRIFVSQMWRYICSFFLLNNIAFFIPLPS 101
W+RS + IC FLL NI IP+ S
Sbjct: 45 WIRSTSVGLLLITIICHLFLLLNIFISIPIIS 76
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 140 EKGTYIPPHLRNKDSTSDPDLVLLKRQVKSVLNKLT 247
EKG YI PHLR D + + + S ++T
Sbjct: 172 EKGRYIAPHLRAGSGRESGDSMFKRERDDSATLRVT 207
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 53 TNVKVDEKP-DVWEDIYGRK 109
TN ++ E+P D W D+YG K
Sbjct: 371 TNTELLEEPIDFWSDVYGFK 390
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 306 LLLPAYNLSIDVQAQWRFVPVNLFKTLL 223
L+ P N S Q+ W FVP N F+ +
Sbjct: 216 LVEPPENYSWAPQSDWTFVPPNEFRRFI 243
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 24.6 bits (51), Expect = 3.7
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +2
Query: 23 IEDLSGDENETNVKVDEKPDVWEDIYGRKRDKEGNVIKEEKGTYIPPHLRNKDSTSDP 196
++ +S + + D P+ +EDI+G E + EE+ P +K+ + P
Sbjct: 1486 VDSMSKERENVSSNEDNSPEAFEDIFGILFKNESGL--EEQQNLEPSSQMDKEGSKLP 1541
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 118 FIPLPSINIFPHIRFFIHF 62
FIPLPS +F I FF+ F
Sbjct: 472 FIPLPSAYLFTIIDFFMVF 490
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 14 EDDIEDLSGDENETNVKVDEKPDVWEDIYGRKRDKEGNV 130
EDD ED S D + + E+ D+ G + GN+
Sbjct: 347 EDDEEDESSDASNNEYNIQERNDLGNIRTGTNTPRLGNL 385
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 24.2 bits (50), Expect = 4.8
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +2
Query: 53 TNVKVDEKPDVWEDIYGRKRDKEGNVIKEEKG 148
T+V ++ W+++ G+K ++ N +K G
Sbjct: 422 TDVDFEQPRAFWQNVLGKKPGQQDNFVKNVAG 453
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 14 EDDIEDLSGDENETNVKVDEKPDVWEDIYGRKRDKEGNV 130
E DIE S D +E ++ ++ V+ D + K+G V
Sbjct: 103 EKDIEIFSNDTHEKSIACSDRQVVYADGSSLRNGKKGAV 141
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 8 RHEDDIEDLSGDENETNV 61
+ EDD++D +GD N T V
Sbjct: 424 KKEDDLKDSTGDLNTTQV 441
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 14 EDDIEDLSGDENETNVKVDE 73
ED E LSG E+ETN + +E
Sbjct: 101 EDLPESLSGSESETNSESEE 120
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 23.8 bits (49), Expect = 6.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 59 VKVDEKPDVWEDIYGRKRDKEGNVIKEEKGTYIPPHLRNK 178
V+V++ PD+ + YG+K K V ++IP +R K
Sbjct: 429 VEVEKLPDLILESYGKKAPKFLRVF-ARSSSHIPKMIRRK 467
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 14 EDDIEDLSGDENETNVKVDEKPDVWEDIYGR 106
EDD + D+N + K E + ED++GR
Sbjct: 413 EDDDDSTFSDKNSKDFKETEDMNGAEDMHGR 443
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2
Query: 80 DVWEDIYGRKRDKEGNVIKEEKGTYIPP 163
D + +++GR+ ++ G V++ E PP
Sbjct: 62 DAYYEVHGRRLERGGGVLRVEWAKQPPP 89
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 32 LSGDENETNVKVDEKPDVWE 91
L GDE ETNV + K + E
Sbjct: 246 LEGDEGETNVLIKVKASICE 265
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 23.4 bits (48), Expect = 8.5
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 163 WRYICSFFLLNNIAFFIPLP 104
W Y C FFL F I P
Sbjct: 345 WVYACIFFLTRVFCFLIDTP 364
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 185 TSDPDLVLLKRQVKSVLNKLTGTNLHWACTSIERLYAGNSRN 310
TS L LLKR++ L L W ++L + + R+
Sbjct: 169 TSQLKLALLKRKLSFFREALNSAELEWKRVQQDQLTSASERS 210
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 94 IFPHIRFFIHFNISFILIT*EIFYVIL 14
IF + + F +SF IT IF+VIL
Sbjct: 406 IFMSTTYALAFGLSFASITSVIFHVIL 432
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 23.4 bits (48), Expect = 8.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 267 AQWRFVPVNLFKTLLTCLFNNTKSGSEVESLFLKCGGIYV 148
AQ+ F N K + C +N+ G E LF G IY+
Sbjct: 79 AQYSFTVKNPGKYMY-CFYNDALDGESKEVLFNVHGVIYI 117
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 190 RSRIFVSQMWRYICSF 143
RS + V +W+YIC F
Sbjct: 298 RSPLIVGGIWQYICFF 313
>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 23.4 bits (48), Expect = 8.5
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 137 EEKGTYIPPHLRNKDSTSDPDLVLLKRQVKSVLNKLTGTNL 259
+EK + NKDST D L K L KL N+
Sbjct: 41 QEKVKFSSSRFYNKDSTYSKDQGLAKESAALELQKLKQENV 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,229,579
Number of Sequences: 5004
Number of extensions: 24630
Number of successful extensions: 94
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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