Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_C02
         (318 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   6.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   6.3  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 20  DIEDLSGDENETNVKV 67
           D+EDL+ +  + N+KV
Sbjct: 99  DLEDLTAEAKKQNLKV 114


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 89  EDIYGRK-RDKEGNVIKEEKGTYIPPHLRNK 178
           EDI  R   +K+G V+ E  G + P H+  +
Sbjct: 251 EDIQVRFFEEKDGQVLWEGFGDFQPVHVHKQ 281


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 89  EDIYGRK-RDKEGNVIKEEKGTYIPPHLRNK 178
           EDI  R   +K+G V+ E  G + P H+  +
Sbjct: 251 EDIQVRFFEEKDGQVLWEGFGDFQPVHVHKQ 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,006
Number of Sequences: 438
Number of extensions: 1540
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)