Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C01
(127 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 50 4e-08
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 34 0.003
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 28 0.20
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 27 0.45
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 1.0
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 25 1.4
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 25 1.4
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 25 1.8
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 24 3.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 24 3.2
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 23 4.2
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 23 4.2
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 23 4.2
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 23 5.6
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 23 5.6
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 23 5.6
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 23 5.6
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 23 7.4
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 23 7.4
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 23 7.4
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 23 7.4
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 23 7.4
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 23 7.4
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 22 9.7
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 22 9.7
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 22 9.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 22 9.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 22 9.7
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 22 9.7
SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma... 22 9.7
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 22 9.7
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 50.0 bits (114), Expect = 4e-08
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 54 DMPTFKCVLVGDGGTGKTTFVKRH 125
++PTFK VLVGDGGTGKTTFVKRH
Sbjct: 6 NVPTFKLVLVGDGGTGKTTFVKRH 29
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 33.9 bits (74), Expect = 0.003
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
MPT KCV+VGDG GKT
Sbjct: 1 MPTIKCVVVGDGAVGKT 17
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.9 bits (59), Expect = 0.20
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 75 VLVGDGGTGKTTFVK 119
VL+G+ GTGKTTF K
Sbjct: 379 VLLGENGTGKTTFCK 393
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 26.6 bits (56), Expect = 0.45
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK VL+GD G GK+ + R
Sbjct: 11 FKTVLIGDSGVGKSNLLMR 29
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 72 CVLVGDGGTGKTTFVK 119
C+LVGD TGKT ++
Sbjct: 1872 CILVGDTATGKTCILR 1887
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 75 VLVGDGGTGKTTFVK 119
+LVG+ GTGKTT ++
Sbjct: 471 LLVGETGTGKTTTIQ 485
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 75 VLVGDGGTGKTT 110
+LVGD G GKTT
Sbjct: 1190 LLVGDTGCGKTT 1201
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 1.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 69 KCVLVGDGGTGKT 107
K V+VGDGG GKT
Sbjct: 16 KLVVVGDGGCGKT 28
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 1.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 66 FKCVLVGDGGTGKT 107
+K V+VGDGG GK+
Sbjct: 9 YKLVVVGDGGVGKS 22
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +L+GD G GK+ + R
Sbjct: 9 FKLLLIGDSGVGKSCLLLR 27
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 23.8 bits (49), Expect = 3.2
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 78 LVGDGGTGKTTFVK 119
L+GD G+GK+TF++
Sbjct: 106 LLGDNGSGKSTFLE 119
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVK 119
+ LVG G GKTT +K
Sbjct: 622 RVALVGPNGAGKTTLIK 638
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +3
Query: 75 VLVGDGGTGKTTFVKR 122
++VG G+GKTTF+++
Sbjct: 12 IVVGMAGSGKTTFMQQ 27
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 8 FVQSRTKDINYRNGR*YAYIQMCACWRWWNRENYVCKTTF 127
F + ++K N+R+ Y I++ + +R+ N+E+ V F
Sbjct: 18 FYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVGF 57
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFV 116
K V+VGDG GKT+ +
Sbjct: 10 KLVVVGDGACGKTSLL 25
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 9 SYNPGLKI*ITEMADDMPT-FKCVLVGDGGTGKTTFVK 119
+++P + + + D+P + +LVG G GK+T +K
Sbjct: 11 TFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLK 48
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 69 KCVLVGDGGTGKT 107
K V+VGDG GKT
Sbjct: 8 KLVIVGDGACGKT 20
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 69 KCVLVGDGGTGKT 107
K V+VGDG GKT
Sbjct: 8 KLVIVGDGACGKT 20
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFV 116
K V++GDG GKT+ +
Sbjct: 15 KIVILGDGAAGKTSLL 30
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 75 VLVGDGGTGKTTF 113
+L G GTGKTTF
Sbjct: 34 MLCGASGTGKTTF 46
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 22.6 bits (46), Expect = 7.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 75 VLVGDGGTGKTTF 113
VL G GG GK+TF
Sbjct: 65 VLSGKGGVGKSTF 77
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 22.6 bits (46), Expect = 7.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = -3
Query: 77 HTFECRHIICHFC 39
HT C ++C FC
Sbjct: 397 HTIPCAAVLCFFC 409
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 75 VLVGDGGTGKTTFVK 119
V++G G+GKTT K
Sbjct: 18 VVIGPAGSGKTTMAK 32
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVKR 122
K V++GD G GKT + +
Sbjct: 10 KVVILGDSGVGKTCLMNQ 27
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 22.6 bits (46), Expect = 7.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 75 VLVGDGGTGKTTFV 116
++VG+ GKTTFV
Sbjct: 122 IVVGESSLGKTTFV 135
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 22.2 bits (45), Expect = 9.7
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +2
Query: 89 WWNRENY 109
WWNRE Y
Sbjct: 465 WWNREGY 471
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVKR 122
K VL+GD GK++ V R
Sbjct: 16 KLVLLGDSAVGKSSLVLR 33
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3
Query: 65 CRHIICHFCNL 33
C HI C+FC L
Sbjct: 221 CGHIFCNFCIL 231
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 75 VLVGDGGTGKTTFVKRH 125
VL+G+ G+GKTT + ++
Sbjct: 530 VLLGETGSGKTTQITQY 546
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 22.2 bits (45), Expect = 9.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3
Query: 75 VLVGDGGTGKTTFVK 119
++VG G+GKTT ++
Sbjct: 31 LIVGQNGSGKTTIIE 45
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 22.2 bits (45), Expect = 9.7
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +2
Query: 86 RWWNRENYVCKTT 124
RW+++EN++ TT
Sbjct: 86 RWYSKENHISATT 98
>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 127
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 34 KLQKWQMICLHSNVCLLAMVEP 99
KLQK +IC+ + +C+L P
Sbjct: 82 KLQKEGIICVATKLCILVSHYP 103
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVKR 122
K +L+GD G GK+ + R
Sbjct: 11 KLLLIGDSGVGKSCLLLR 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,308
Number of Sequences: 5004
Number of extensions: 6452
Number of successful extensions: 56
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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