Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C01
(127 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical pr... 52 7e-08
U23452-10|AAK31543.1| 191|Caenorhabditis elegans Hypothetical p... 31 0.15
S82771-1|AAC05600.1| 191|Caenorhabditis elegans cdc42 homolog p... 31 0.15
Z82276-7|CAB05247.2| 195|Caenorhabditis elegans Hypothetical pr... 29 0.60
X68492-1|CAA48506.1| 191|Caenorhabditis elegans small ras-relat... 29 0.60
U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like prot... 29 0.60
U55018-1|AAB40386.1| 195|Caenorhabditis elegans CeRac2 protein. 29 0.60
L04287-1|AAA28141.1| 191|Caenorhabditis elegans rac1 protein pr... 29 0.60
L03711-1|AAA28140.1| 191|Caenorhabditis elegans rac1 protein pr... 29 0.60
AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical ... 29 0.60
AF226867-1|AAF33846.1| 191|Caenorhabditis elegans cell-corpse e... 29 0.60
AF038608-16|AAC25821.1| 191|Caenorhabditis elegans Cell death a... 29 0.60
AF038608-15|AAC25820.1| 129|Caenorhabditis elegans Cell death a... 29 0.60
AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical ... 28 0.80
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 28 1.1
Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical pr... 28 1.1
U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding pro... 28 1.1
U68263-1|AAB16978.1| 115|Caenorhabditis elegans rab-like protein. 28 1.1
U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical pr... 28 1.1
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 28 1.1
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 27 1.4
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 27 1.8
L10078-1|AAA51433.1| 188|Caenorhabditis elegans guanine nucleot... 27 1.8
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 27 1.8
Z78417-3|CAB01691.1| 195|Caenorhabditis elegans Hypothetical pr... 27 2.4
U82288-1|AAC47729.1| 195|Caenorhabditis elegans Rac-like GTPase... 27 2.4
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 27 2.4
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 27 2.4
AL032632-1|CAA21582.1| 248|Caenorhabditis elegans Hypothetical ... 27 2.4
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 27 2.4
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 26 3.2
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 26 3.2
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 26 3.2
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 26 3.2
AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical ... 26 3.2
AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical ... 26 4.3
Z80789-3|CAB02553.1| 364|Caenorhabditis elegans Hypothetical pr... 25 5.6
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 25 5.6
AY008129-1|AAG32082.1| 364|Caenorhabditis elegans heterotrimeri... 25 5.6
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 25 5.6
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 25 5.6
AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical ... 25 5.6
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 25 5.6
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 25 5.6
Z71180-2|CAA94890.1| 207|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical pr... 25 7.4
U70855-4|AAB09163.1| 625|Caenorhabditis elegans Hypothetical pr... 25 7.4
U68261-1|AAB16976.1| 53|Caenorhabditis elegans rab19-like prot... 25 7.4
U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein. 25 7.4
AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeri... 25 7.4
AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying de... 25 7.4
AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein. 25 7.4
Z81512-5|CAI79169.1| 417|Caenorhabditis elegans Hypothetical pr... 25 9.8
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 25 9.8
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 25 9.8
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 25 9.8
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 25 9.8
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 25 9.8
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 25 9.8
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 25 9.8
AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical... 25 9.8
>Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical
protein K01G5.4 protein.
Length = 215
Score = 51.6 bits (118), Expect = 7e-08
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +3
Query: 51 DDMPTFKCVLVGDGGTGKTTFVKRH 125
D +PTFK VLVGDGGTGKTTFVKRH
Sbjct: 5 DGIPTFKLVLVGDGGTGKTTFVKRH 29
>U23452-10|AAK31543.1| 191|Caenorhabditis elegans Hypothetical
protein R07G3.1 protein.
Length = 191
Score = 30.7 bits (66), Expect = 0.15
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M T KCV+VGDG GKT
Sbjct: 1 MQTIKCVVVGDGAVGKT 17
>S82771-1|AAC05600.1| 191|Caenorhabditis elegans cdc42 homolog
protein.
Length = 191
Score = 30.7 bits (66), Expect = 0.15
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M T KCV+VGDG GKT
Sbjct: 1 MQTIKCVVVGDGAVGKT 17
>Z82276-7|CAB05247.2| 195|Caenorhabditis elegans Hypothetical
protein K03D3.10 protein.
Length = 195
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M KCV+VGDG GKT
Sbjct: 1 MQAIKCVVVGDGAVGKT 17
>X68492-1|CAA48506.1| 191|Caenorhabditis elegans small ras-related
protein protein.
Length = 191
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M KCV+VGDG GKT
Sbjct: 1 MQAIKCVVVGDGAVGKT 17
>U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like
protein.
Length = 69
Score = 28.7 bits (61), Expect = 0.60
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK VLVGD G GKT V+R
Sbjct: 11 FKIVLVGDMGVGKTCVVQR 29
>U55018-1|AAB40386.1| 195|Caenorhabditis elegans CeRac2 protein.
Length = 195
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M KCV+VGDG GKT
Sbjct: 1 MQAIKCVVVGDGAVGKT 17
>L04287-1|AAA28141.1| 191|Caenorhabditis elegans rac1 protein
protein.
Length = 191
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M KCV+VGDG GKT
Sbjct: 1 MQAIKCVVVGDGAVGKT 17
>L03711-1|AAA28140.1| 191|Caenorhabditis elegans rac1 protein
protein.
Length = 191
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M KCV+VGDG GKT
Sbjct: 1 MQAIKCVVVGDGAVGKT 17
>AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical
protein Y62E10A.9 protein.
Length = 210
Score = 28.7 bits (61), Expect = 0.60
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK VLVGD G GKT V+R
Sbjct: 11 FKIVLVGDMGVGKTCVVQR 29
>AF226867-1|AAF33846.1| 191|Caenorhabditis elegans cell-corpse
engulfment proteinCED-10 protein.
Length = 191
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M KCV+VGDG GKT
Sbjct: 1 MQAIKCVVVGDGAVGKT 17
>AF038608-16|AAC25821.1| 191|Caenorhabditis elegans Cell death
abnormality protein10, isoform b protein.
Length = 191
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M KCV+VGDG GKT
Sbjct: 1 MQAIKCVVVGDGAVGKT 17
>AF038608-15|AAC25820.1| 129|Caenorhabditis elegans Cell death
abnormality protein10, isoform a protein.
Length = 129
Score = 28.7 bits (61), Expect = 0.60
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M KCV+VGDG GKT
Sbjct: 1 MQAIKCVVVGDGAVGKT 17
>AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical
protein Y45F3A.2 protein.
Length = 216
Score = 28.3 bits (60), Expect = 0.80
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 45 MADDMPTFKCVLVGDGGTGKTTFVKR 122
M D FK VLVG+ G GKT V++
Sbjct: 1 MEDYKYLFKVVLVGNAGVGKTCLVRK 26
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 51 DDMPTFKCVLVGDGGTGKTTFVKR 122
+D ++K +++GD G GKT+ ++R
Sbjct: 7 NDKISYKVLVIGDPGVGKTSIIRR 30
>Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical
protein F17C8.4 protein.
Length = 211
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKTT 110
+P +K V++GDGG GK++
Sbjct: 15 LPYYKLVVIGDGGVGKSS 32
>U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding
protein protein.
Length = 211
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKTT 110
+P +K V++GDGG GK++
Sbjct: 15 LPYYKLVVIGDGGVGKSS 32
>U68263-1|AAB16978.1| 115|Caenorhabditis elegans rab-like protein.
Length = 115
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVKRH 125
K V++GD G GKT+ + RH
Sbjct: 54 KVVVLGDSGVGKTSIIYRH 72
>U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical
protein C56E6.2 protein.
Length = 266
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVKRH 125
K V++GD G GKT+ + RH
Sbjct: 54 KVVVLGDSGVGKTSIIYRH 72
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 51 DDMPTFKCVLVGDGGTGKTTFVKR 122
+D ++K +++GD G GKT+ ++R
Sbjct: 7 NDKISYKVLVIGDPGVGKTSIIRR 30
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK V++GDGG GK+ + R
Sbjct: 7 FKYVIIGDGGVGKSNLLLR 25
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK VL+GD G GK+ + R
Sbjct: 12 FKVVLIGDSGVGKSNLLSR 30
>L10078-1|AAA51433.1| 188|Caenorhabditis elegans guanine nucleotide
regulatory proteinprotein.
Length = 188
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 69 KCVLVGDGGTGKT 107
KCV+VGDG GKT
Sbjct: 2 KCVVVGDGAVGKT 14
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK VL+GD G GK+ + R
Sbjct: 12 FKVVLIGDSGVGKSNLLSR 30
>Z78417-3|CAB01691.1| 195|Caenorhabditis elegans Hypothetical
protein C35C5.4 protein.
Length = 195
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 45 MADDMPTFKCVLVGDGGTGKT 107
M+ KCV+VGDG GKT
Sbjct: 1 MSSPSRQIKCVVVGDGTVGKT 21
>U82288-1|AAC47729.1| 195|Caenorhabditis elegans Rac-like GTPase
protein.
Length = 195
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 45 MADDMPTFKCVLVGDGGTGKT 107
M+ KCV+VGDG GKT
Sbjct: 1 MSSPSRQIKCVVVGDGTVGKT 21
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 63 TFKCVLVGDGGTGKTTFVKR 122
TF+ V+ GD GK++FV R
Sbjct: 461 TFRIVMCGDAAVGKSSFVMR 480
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 36 ITEMADDMPTFKCVLVGDGGTGKTTFVKR 122
+T + T+K +VGD GTGK++ + +
Sbjct: 228 MTNASTSHKTYKIYVVGDTGTGKSSLISQ 256
>AL032632-1|CAA21582.1| 248|Caenorhabditis elegans Hypothetical
protein Y11D7A.4 protein.
Length = 248
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 54 DMPTFKCVLVGDGGTGKTTFVKR 122
D K V+VGDG +GKT+ +R
Sbjct: 32 DDKVIKIVVVGDGASGKTSICQR 54
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK V VGD GKT F+ R
Sbjct: 203 FKVVFVGDSAVGKTCFLHR 221
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M +K V+VGDGG GK+
Sbjct: 1 MTEYKLVVVGDGGVGKS 17
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +L+GD G GKT + R
Sbjct: 10 FKLLLIGDSGVGKTCILYR 28
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +L+GD G GKT + R
Sbjct: 10 FKLLLIGDSGVGKTCILYR 28
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 57 MPTFKCVLVGDGGTGKT 107
M +K V+VGDGG GK+
Sbjct: 4 MTEYKLVVVGDGGVGKS 20
>AL110487-1|CAB54424.1| 610|Caenorhabditis elegans Hypothetical
protein Y39E4B.1 protein.
Length = 610
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 75 VLVGDGGTGKTTFVK 119
V++G+ GTGKTT +K
Sbjct: 385 VMLGENGTGKTTMIK 399
>AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical
protein Y40D12A.2 protein.
Length = 512
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 9 SYNPGLKI*ITEMADDMPTFKCVLVGDG 92
+Y P L IT+ D P FK +LVG+G
Sbjct: 169 TYVPMLSARITKANVDFPQFKGMLVGNG 196
>Z80789-3|CAB02553.1| 364|Caenorhabditis elegans Hypothetical
protein F48C11.1 protein.
Length = 364
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 51 DDMPTFKCVLVGDGGTGKTTFVKR 122
DD+ FK +L+G +GK+T K+
Sbjct: 37 DDLNRFKILLLGTAESGKSTIFKQ 60
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +L+GD G GKT + R
Sbjct: 9 FKLLLIGDSGVGKTCVLFR 27
>AY008129-1|AAG32082.1| 364|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 364
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 51 DDMPTFKCVLVGDGGTGKTTFVKR 122
DD+ FK +L+G +GK+T K+
Sbjct: 37 DDLNRFKILLLGTAESGKSTIFKQ 60
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 45 MADDMPTFKCVLVGDGGTGKTTFVKRH 125
M D K + +GD G GKT+F+ R+
Sbjct: 1 MGDYDYLIKFLALGDSGVGKTSFLHRY 27
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +L+GD G GKT + R
Sbjct: 9 FKLLLIGDSGVGKTCVLFR 27
>AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical
protein Y71H2AM.12 protein.
Length = 195
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 51 DDMPTFKCVLVGDGGTGKTTFV 116
D + T K V+VG+ G GKT +
Sbjct: 2 DTIKTVKVVVVGESGAGKTALL 23
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 45 MADDMPTFKCVLVGDGGTGKTTFVKRH 125
M D K + +GD G GKT+F+ R+
Sbjct: 1 MGDYDYLIKFLALGDSGVGKTSFLHRY 27
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +L+GD G GKT + R
Sbjct: 9 FKLLLIGDSGVGKTCVLFR 27
>Z71180-2|CAA94890.1| 207|Caenorhabditis elegans Hypothetical
protein F22E12.2 protein.
Length = 207
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 51 DDMPTFKCVLVGDGGTGKTTFV 116
+D KC+ VG+ GKT+ +
Sbjct: 5 EDEKCLKCIFVGNAAVGKTSMI 26
>Z70205-7|CAA94120.2| 996|Caenorhabditis elegans Hypothetical
protein C11H1.4a protein.
Length = 996
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +3
Query: 75 VLVGDGGTGKTTFVKR 122
+++G G+GKTTF+K+
Sbjct: 505 MVLGGNGSGKTTFIKK 520
>U70855-4|AAB09163.1| 625|Caenorhabditis elegans Hypothetical
protein K08F11.5 protein.
Length = 625
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 45 MADD--MPTFKCVLVGDGGTGKTTFV 116
M+DD + + VL+GD G GKT+ V
Sbjct: 1 MSDDETLADVRIVLIGDEGCGKTSLV 26
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 54 DMPTFKCVLVGDGGTGKTTFVK 119
D F+C++VG GKT F++
Sbjct: 423 DRKVFQCLVVGAKDAGKTVFMQ 444
>U68261-1|AAB16976.1| 53|Caenorhabditis elegans rab19-like
protein.
Length = 53
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 45 MADDMPTFKCVLVGDGGTGKTTFVKR 122
M D FK VLV + G GKT V++
Sbjct: 1 MEDYKYLFKVVLVPNAGVGKTCLVRK 26
>U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein.
Length = 355
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVKR 122
K +L+G G +GK+TF+K+
Sbjct: 35 KLLLLGTGESGKSTFIKQ 52
>AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 355
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVKR 122
K +L+G G +GK+TF+K+
Sbjct: 35 KLLLLGTGESGKSTFIKQ 52
>AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying
defective protein 30,isoform a protein.
Length = 355
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVKR 122
K +L+G G +GK+TF+K+
Sbjct: 35 KLLLLGTGESGKSTFIKQ 52
>AB054992-1|BAB62002.1| 996|Caenorhabditis elegans peroxin protein.
Length = 996
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +3
Query: 75 VLVGDGGTGKTTFVKR 122
+++G G+GKTTF+K+
Sbjct: 505 MVLGGNGSGKTTFIKK 520
>Z81512-5|CAI79169.1| 417|Caenorhabditis elegans Hypothetical
protein F25C8.5 protein.
Length = 417
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 95 STIANKHTFECRHIICHFCN 36
+T +KH F + +ICHF N
Sbjct: 67 TTCYDKHKFSEKQMICHFRN 86
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +L+GD G GK+ + R
Sbjct: 12 FKLLLIGDSGVGKSCLLLR 30
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +++GD G GK++ + R
Sbjct: 11 FKLLIIGDSGVGKSSLLLR 29
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +++GD G GK++ + R
Sbjct: 11 FKLLIIGDSGVGKSSLLLR 29
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVK 119
F + VG+ GTGKTT ++
Sbjct: 100 FNLMCVGETGTGKTTLIE 117
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVK 119
F + VG+ GTGKTT ++
Sbjct: 100 FNLMCVGETGTGKTTLIE 117
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVK 119
F + VG+ GTGKTT ++
Sbjct: 169 FNLMCVGETGTGKTTLIE 186
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 66 FKCVLVGDGGTGKTTFVKR 122
FK +L+GD G GK+ + R
Sbjct: 12 FKLLLIGDSGVGKSCLLLR 30
>AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical
protein Y47G6A.27 protein.
Length = 421
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 54 DMPTFKCVLVGDGGTGKTTFVK 119
D F+C++VG GKT F++
Sbjct: 220 DRKVFQCLVVGAKDAGKTVFMQ 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,674
Number of Sequences: 27780
Number of extensions: 36463
Number of successful extensions: 261
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 22
effective length of database: 12,129,038
effective search space used: 230451722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -