Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_C01
(127 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.084
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.084
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.084
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.084
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.084
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.084
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.084
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.084
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 21 1.0
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 1.8
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 20 3.1
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 19 5.5
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 19 5.5
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 19 7.3
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 18 9.6
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 18 9.6
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 18 9.6
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.084
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 19 PD*RYKLQKW-QMICLHSNVCLLAMVEPGK 105
PD RY + W +M+ L CLL M PGK
Sbjct: 286 PD-RYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.084
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 19 PD*RYKLQKW-QMICLHSNVCLLAMVEPGK 105
PD RY + W +M+ L CLL M PGK
Sbjct: 286 PD-RYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.084
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 19 PD*RYKLQKW-QMICLHSNVCLLAMVEPGK 105
PD RY + W +M+ L CLL M PGK
Sbjct: 286 PD-RYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.084
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 19 PD*RYKLQKW-QMICLHSNVCLLAMVEPGK 105
PD RY + W +M+ L CLL M PGK
Sbjct: 286 PD-RYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.084
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 19 PD*RYKLQKW-QMICLHSNVCLLAMVEPGK 105
PD RY + W +M+ L CLL M PGK
Sbjct: 286 PD-RYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.084
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 19 PD*RYKLQKW-QMICLHSNVCLLAMVEPGK 105
PD RY + W +M+ L CLL M PGK
Sbjct: 286 PD-RYVMPSWIKMLFLQWLPCLLRMSRPGK 314
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.084
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 19 PD*RYKLQKW-QMICLHSNVCLLAMVEPGK 105
PD RY + W +M+ L CLL M PGK
Sbjct: 354 PD-RYVMPSWIKMLFLQWLPCLLRMSRPGK 382
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.084
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 19 PD*RYKLQKW-QMICLHSNVCLLAMVEPGK 105
PD RY + W +M+ L CLL M PGK
Sbjct: 354 PD-RYVMPSWIKMLFLQWLPCLLRMSRPGK 382
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 21.4 bits (43), Expect = 1.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +1
Query: 46 WQMICLHSNVCLLAMV 93
WQMICL + L++++
Sbjct: 399 WQMICLIVVIALVSII 414
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 20.6 bits (41), Expect = 1.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 69 KCVLVGDGGTGKTTFVKR 122
K +L G G G+T F+K+
Sbjct: 1034 KSLLTGHGLQGQTIFIKQ 1051
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 19.8 bits (39), Expect = 3.1
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +2
Query: 86 RWWNRENYVCKTT 124
RWW+R +TT
Sbjct: 44 RWWSRPREPAQTT 56
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 19.0 bits (37), Expect = 5.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 36 ITEMADDMPTFKCVL 80
+T +A MPT+ C L
Sbjct: 647 LTLVATSMPTYICYL 661
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 19.0 bits (37), Expect = 5.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -3
Query: 89 IANKHTFECRHIICHFC 39
I N HT + IC+ C
Sbjct: 22 IQNVHTRPSKEPICNIC 38
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 18.6 bits (36), Expect = 7.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1
Query: 64 HSNVCLLAMVEPG 102
HSN+ + M+E G
Sbjct: 116 HSNIVKVLMIEQG 128
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 18.2 bits (35), Expect = 9.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +3
Query: 36 ITEMADDMPTFKCVLVGDGGTG 101
I E A+D+ + + +GG G
Sbjct: 1687 IPETAEDISPYATFQLSEGGGG 1708
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 18.2 bits (35), Expect = 9.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +3
Query: 36 ITEMADDMPTFKCVLVGDGGTG 101
I E A+D+ + + +GG G
Sbjct: 1683 IPETAEDISPYATFQLSEGGGG 1704
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 18.2 bits (35), Expect = 9.6
Identities = 6/16 (37%), Positives = 8/16 (50%)
Frame = -3
Query: 83 NKHTFECRHIICHFCN 36
+KH +C FCN
Sbjct: 27 DKHEQSDTLYVCEFCN 42
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,054
Number of Sequences: 438
Number of extensions: 518
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 22
effective length of database: 136,707
effective search space used: 2597433
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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