Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B24
(281 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 27 0.67
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 0.89
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 0.89
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 1.2
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 2.7
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 25 2.7
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 24 4.7
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 23 6.3
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 23 6.3
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 23 6.3
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 23 8.3
SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 23 8.3
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 23 8.3
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 0.67
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 183 RVYTGHQLFVLCYYFHNNIGRLSSAS 106
RV+ GHQ V C FH N L++ S
Sbjct: 481 RVFVGHQNDVDCVSFHPNAAYLATGS 506
>SPMIT.03 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial||Partial|Manual
Length = 323
Score = 26.2 bits (55), Expect = 0.89
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 48 DTPKDVLNVHIVPHTHDDVGWLKTVDQYYYGSNN 149
D K+ L I + ++G+ K+ D YYYGS +
Sbjct: 231 DQKKEYLLSLIKDNLGGNIGYRKSQDTYYYGSTS 264
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 26.2 bits (55), Expect = 0.89
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -1
Query: 278 SVCLTHHFQKKAVSTVDQPSFWKIPYSRYNRIEYILDTSFLYCVITSIIILVDCLQPAD 102
++ +H+FQK + W + +E +D + +++IL+DCL P D
Sbjct: 740 TIVKSHNFQKFEEEFGNSRKEWLQYLASVGYLEKAIDLAEKVKDFQTMVILLDCLDPKD 798
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.8 bits (54), Expect = 1.2
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 120 VDQYYYGSNNTIQKAGVQYILDSVIPRIWDFPKRRLIYGGDSF 248
+ + + GSN ++ AGV + ++P+ P R++ +F
Sbjct: 15 ISKAFLGSNRVLETAGVSQLSKHLLPQWSGVPHRKISASATNF 57
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 24.6 bits (51), Expect = 2.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 180 VYTGHQLFVLCYYFHNNIGRLSSAS 106
+ TGH +V+C FH + + SAS
Sbjct: 132 ILTGHSHYVMCAAFHPSEDLIVSAS 156
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 24.6 bits (51), Expect = 2.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 236 TVDQPSFWKIPYSRY 192
TVDQ + W PYSRY
Sbjct: 245 TVDQYNTWYGPYSRY 259
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 23.8 bits (49), Expect = 4.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 270 PDPPLPEESC 241
PDPP PEE C
Sbjct: 233 PDPPSPEEIC 242
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 23.4 bits (48), Expect = 6.3
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = -3
Query: 249 ESCLHRRSTFFLENPIFAV*QNRVYTGHQLFVLCYYFHNNIGRLSSASRHRHVYGALYER 70
ES L + +T E PI + LF+LC + A HR VYG+
Sbjct: 382 ESKLMKNTT---ETPIKRTSVEKQVNSQILFLLCIFVFLCFASSLGALIHRSVYGSALSY 438
Query: 69 LKRPS 55
+K S
Sbjct: 439 VKYTS 443
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 23.4 bits (48), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 267 DPPLPEESCLHRRSTFFLENP 205
DP + +ESCL ST + ++P
Sbjct: 84 DPYVTKESCLFVLSTLYCDSP 104
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 23.4 bits (48), Expect = 6.3
Identities = 6/26 (23%), Positives = 14/26 (53%)
Frame = -3
Query: 87 GALYERLKRPSVCPDNFHNRTLHRPL 10
G ++ + P+N++ +HRP+
Sbjct: 72 GYIFAHISHHKASPENYYKGNIHRPV 97
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 23.0 bits (47), Expect = 8.3
Identities = 8/48 (16%), Positives = 23/48 (47%)
Frame = +3
Query: 66 LNVHIVPHTHDDVGWLKTVDQYYYGSNNTIQKAGVQYILDSVIPRIWD 209
+ ++ H H D + ++ +G N G+ Y++D++ +++
Sbjct: 107 IKTFLITHCHLDHIYGAVINSAMFGPQNPRTIVGLNYVIDTLKKHVFN 154
>SPBC18E5.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 186
Score = 23.0 bits (47), Expect = 8.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 176 YTRFCYTANMGFSKKKV 226
+ CY N+G SKK V
Sbjct: 83 FPSICYIGNVGLSKKNV 99
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 23.0 bits (47), Expect = 8.3
Identities = 11/54 (20%), Positives = 23/54 (42%)
Frame = -1
Query: 269 LTHHFQKKAVSTVDQPSFWKIPYSRYNRIEYILDTSFLYCVITSIIILVDCLQP 108
L H F ++ + S + + +N I SF+ T+I++++ P
Sbjct: 471 LQHFFDERINDSYAAASHYVSQFPDFNMIRLFKYISFILGSFTAILVIITVFDP 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,670
Number of Sequences: 5004
Number of extensions: 28428
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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