Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B24
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   2.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   2.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   5.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   8.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 118 QSTNIIMEVITQYKKLVSSIYSILLYREYGI 210
           QS  ++  V +     VS++YS   Y EYGI
Sbjct: 125 QSIALVDVVKSANWSYVSTVYSEGSYGEYGI 155


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 118 QSTNIIMEVITQYKKLVSSIYSILLYREYGI 210
           QS  ++  V +     VS++YS   Y EYGI
Sbjct: 215 QSIALVDVVKSANWSYVSTVYSEGSYGEYGI 245


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 158 KSWCPVYTRFCYTANMGFSKK 220
           K+W PV+T +    N+   KK
Sbjct: 436 KNWLPVHTSYKSGLNLEQEKK 456


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = +3

Query: 138 GSNNTIQKAGVQYILDSVIPRIWDFPKRRLIYGGDSFLLEVVGQA 272
           G     +   +Q +  S    I   P R +      F+L VVG A
Sbjct: 45  GKEQDFRFEAIQCLQSSAFKEIKTLPDRGMWSSKIEFILSVVGLA 89


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 105 RHRHVYGALYERLKRPSVCPDNFHNRT 25
           R   +    Y+R K   +  D +HN+T
Sbjct: 55  RQAAIQSGEYDRTKNYPLDVDQWHNKT 81


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 168 VQYILDSVIPRIWDFPKRRLIYGGDSFLLEVVGQA 272
           +Q +  S    I   P R +      F+L VVG A
Sbjct: 2   IQCLQSSAFKEIKTLPDRGMWSSKIEFILSVVGLA 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,178
Number of Sequences: 438
Number of extensions: 2017
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)