Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B23
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   175   2e-45
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   175   2e-45
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    31   0.084
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    27   0.79 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   0.79 
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   0.79 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   1.0  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.4  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   3.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   4.2  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   5.5  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    25   5.5  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    24   7.3  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    24   7.3  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    24   7.3  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    24   7.3  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  175 bits (427), Expect = 2e-45
 Identities = 83/127 (65%), Positives = 100/127 (78%)
 Frame = +1

Query: 10  SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 189
           +RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRLD+G
Sbjct: 4   TRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSG 63

Query: 190 NFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 369
           NF+WGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G 
Sbjct: 64  NFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMGS 123

Query: 370 KTGAKLT 390
           K G K T
Sbjct: 124 K-GKKAT 129


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  175 bits (427), Expect = 2e-45
 Identities = 83/127 (65%), Positives = 100/127 (78%)
 Frame = +1

Query: 10  SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 189
           +RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN K+RALRLD+G
Sbjct: 4   TRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSG 63

Query: 190 NFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 369
           NF+WGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G 
Sbjct: 64  NFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMGS 123

Query: 370 KTGAKLT 390
           K G K T
Sbjct: 124 K-GKKAT 129


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 30.7 bits (66), Expect = 0.084
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 13   RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 186
            RD  +K +  G       K+ +   EL    +N  +  Q+  L+ S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 187  GNFAWGSECSTRKTRI 234
            G+     E +  K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 103 WQPGDLTHTSSSYEWAHVC 47
           W PG      SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 349 YLLPLGRKTGAKLTE 393
           Y+LPLGRKT  K TE
Sbjct: 492 YILPLGRKTARKCTE 506


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
 Frame = +1

Query: 7    GSRDHWHKRRATGGKRAPIRKKRKY---ELGRPAANTKLGPQRIHLVRSRGGNTKYRALR 177
            G  D W   +A G   +PIR+ ++Y   +L  P    K      H    R    K R + 
Sbjct: 755  GRFDEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKF-RDNYHKQNKRNREAKERGIG 813

Query: 178  LDTGNFAWGSECSTRKTRIIDVVYNASNN 264
            +   N    S    RK R +     A NN
Sbjct: 814  IKV-NSELKSAVEIRKARELKEKRLAKNN 841


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +1

Query: 94  PAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 273
           P  NT + PQ     RSR   T  R+L   +G  +  S  ++ +TR    V +AS+N L+
Sbjct: 530 PLQNTVISPQPTR--RSR---TPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLI 581

Query: 274 RTKTLVKNAIVVVDATPFRQWYE 342
              +   ++  V   TPF   +E
Sbjct: 582 SIISSKPSSSTVQRQTPFHSPFE 604


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 306 DNSILYQGFGTHQFIVRGIINNI 238
           +NS+ +Q F +H FI R +IN I
Sbjct: 541 ENSLYHQSFSSHWFISRLLINPI 563


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 375 CLPSEWQQVVAFIPLPERRGIHHDNSILYQGFGT 274
           C+P+E   ++A+ P+P  + + H N I +  F T
Sbjct: 63  CMPTE---IIAYQPIPVFQRLLHSNDIYFPYFQT 93


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 199 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRK 372
           WGS+     +K  + +V+  +++ +  +T  L         AT F  + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 155 LPPRDLTKWMRWG-PSL 108
           L P+D+ KW RW  PSL
Sbjct: 32  LSPQDILKWCRWTLPSL 48


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 16  DHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNF 195
           + W K   T  K+    +KRK  L R A   +L  + +  + S+GG    +A + ++   
Sbjct: 32  EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAKKNSSLD 90

Query: 196 AWGSE 210
           A+ +E
Sbjct: 91  AFLNE 95


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 260 LEAL*TTSIIRVLRVEHSDPHAKFPVSRR 174
           LE + T S  +V R  H DP  K P  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 197 AKFPVSRRRA-RYLVLPPRDLTKW 129
           AK P+ +RR  + L+L  RDLT W
Sbjct: 420 AKKPILKRRTPQELLLSGRDLTPW 443


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 201 PCEVSSIKTQGTIFSVTTTGSD 136
           P  V+SIK  GT FS    G+D
Sbjct: 768 PTAVASIKVSGTEFSTLLHGND 789


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 351 VVAFIPLPERRGIHHDNSI--LYQGFGTHQFIVRGIINN 241
           ++ F+ L E   IH  N    LY+ F T   +++GI++N
Sbjct: 100 LLPFLILEELMDIHTVNECAKLYEYFETRPSLMKGIVSN 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,047
Number of Sequences: 5004
Number of extensions: 36476
Number of successful extensions: 96
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)