Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B23
         (394 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   239   3e-63
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   239   3e-63
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   239   3e-63
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   239   3e-63
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...   180   2e-45
AK127331-1|BAC86934.1|  178|Homo sapiens , member 1 (TRPV1).  pr...    28   9.5  

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  239 bits (584), Expect = 3e-63
 Identities = 107/127 (84%), Positives = 115/127 (90%)
 Frame = +1

Query: 10  SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 189
           SRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD G
Sbjct: 4   SRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVG 63

Query: 190 NFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 369
           NF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGR
Sbjct: 64  NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR 123

Query: 370 KTGAKLT 390
           K GAKLT
Sbjct: 124 KKGAKLT 130


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  239 bits (584), Expect = 3e-63
 Identities = 107/127 (84%), Positives = 115/127 (90%)
 Frame = +1

Query: 10  SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 189
           SRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD G
Sbjct: 4   SRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVG 63

Query: 190 NFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 369
           NF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGR
Sbjct: 64  NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR 123

Query: 370 KTGAKLT 390
           K GAKLT
Sbjct: 124 KKGAKLT 130


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  239 bits (584), Expect = 3e-63
 Identities = 107/127 (84%), Positives = 115/127 (90%)
 Frame = +1

Query: 10  SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 189
           SRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD G
Sbjct: 4   SRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVG 63

Query: 190 NFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 369
           NF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGR
Sbjct: 64  NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR 123

Query: 370 KTGAKLT 390
           K GAKLT
Sbjct: 124 KKGAKLT 130


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  239 bits (584), Expect = 3e-63
 Identities = 107/127 (84%), Positives = 115/127 (90%)
 Frame = +1

Query: 10  SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 189
           SRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD G
Sbjct: 4   SRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVG 63

Query: 190 NFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 369
           NF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGR
Sbjct: 64  NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR 123

Query: 370 KTGAKLT 390
           K GAKLT
Sbjct: 124 KKGAKLT 130


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score =  180 bits (437), Expect = 2e-45
 Identities = 91/127 (71%), Positives = 98/127 (77%)
 Frame = +1

Query: 10  SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 189
           SRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGG            
Sbjct: 4   SRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG------------ 51

Query: 190 NFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 369
                  C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGR
Sbjct: 52  -------C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR 103

Query: 370 KTGAKLT 390
           K GAKLT
Sbjct: 104 KKGAKLT 110


>AK127331-1|BAC86934.1|  178|Homo sapiens , member 1 (TRPV1).
           protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 295 NAIVVVDATPFRQWYESHYLLPLGRKTGAKLT 390
           N I+ V  TPF  W + H+  P     G  LT
Sbjct: 5   NPIIAVFRTPFAPWLQFHWSAPFSAWLGTVLT 36


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,042,949
Number of Sequences: 237096
Number of extensions: 1564876
Number of successful extensions: 6452
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6452
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)