Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B23
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 201 2e-52
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.096
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.096
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.096
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.096
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.096
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.096
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 2.7
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 27 3.6
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 27 3.6
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 27 3.6
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 27 3.6
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 27 3.6
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 26 8.4
U80031-2|AAB37612.1| 468|Caenorhabditis elegans Hypothetical pr... 26 8.4
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 8.4
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 8.4
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 201 bits (490), Expect = 2e-52
Identities = 91/128 (71%), Positives = 105/128 (82%)
Frame = +1
Query: 10 SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 189
SRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRLD+G
Sbjct: 4 SRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSG 63
Query: 190 NFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 369
NF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL R
Sbjct: 64 NFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLAR 123
Query: 370 KTGAKLTE 393
K AKL+E
Sbjct: 124 KKNAKLSE 131
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 169 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 273
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 169 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 273
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 169 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 273
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 169 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 273
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 169 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 273
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 169 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 273
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 211 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 333
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 372 LPSEWQQVVAFIPLPERRGIHHDNSI 295
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 122 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRL 9
W S V +GRPN +++G P A+L C S++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQI 420
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 372 LPSEWQQVVAFIPLPERRGIHHDNSI 295
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 122 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRL 9
W S V +GRPN +++G P A+L C S++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQI 420
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 122 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRL 9
W S V +GRPN +++G P A+L C S++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQI 329
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 211 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 327
C+ R + + S+N+LV K VKNAI +D F
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSF 1709
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 211 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 327
C+ R + + S+N+LV K VKNAI +D F
Sbjct: 1671 CAPRPVLTMPIQRMPSSNDLVMKKLQVKNAISNLDLRSF 1709
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 82 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 213
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 82 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 213
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>U80031-2|AAB37612.1| 468|Caenorhabditis elegans Hypothetical
protein B0554.5 protein.
Length = 468
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 384 LGTCLPSEWQQVVAFIPLPERRGIHHDNSILYQGFGT 274
+G C + + V+ + +P+RR S +YQ FG+
Sbjct: 372 IGDCCINSVRSVICALVMPKRRAQAFSVSKIYQAFGS 408
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 134 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 45
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 134 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 45
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,993,680
Number of Sequences: 27780
Number of extensions: 212906
Number of successful extensions: 553
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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