Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B23
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   257   3e-71
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   0.72 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   2.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   2.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   3.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   8.8  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              20   8.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   8.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  257 bits (630), Expect = 3e-71
 Identities = 116/128 (90%), Positives = 122/128 (95%)
 Frame = +1

Query: 10  SRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTG 189
           SRDHWHKRRATGGKR PIRKKRK+ELGRPAANTKLGPQRIH VR+RGGN KYRALRLDTG
Sbjct: 4   SRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTG 63

Query: 190 NFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGR 369
           NF+WGSEC+TRKTRIIDVVYNASNNELVRTKTLVKNAIV +DATPFRQWYE HY+LPLGR
Sbjct: 64  NFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGR 123

Query: 370 KTGAKLTE 393
           K GAKLTE
Sbjct: 124 KRGAKLTE 131


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 0.72
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 230 VLLMLFIMPLTMNWCVPKPW*RMLLSWWMPRL 325
           VL + F  P T N     PW R +   WMPRL
Sbjct: 333 VLNVHFRSPSTHNM---SPWVRQVFLNWMPRL 361


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 252 IINNINNTSLAG 217
           +INN NNTS+ G
Sbjct: 488 VINNRNNTSMKG 499


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 232 YESCGLNIQIPMRSFQYQD 176
           YE CGL  + PM SFQ  D
Sbjct: 653 YE-CGLRFEDPMISFQPGD 670


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +2

Query: 230 VLLMLFIMPLTMNWCVPKPW 289
           +L+   +MPL + W +   W
Sbjct: 85  LLVTFLMMPLEIGWAITVSW 104


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 220 RKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 333
           RK  + +VVY    N + +    V + I ++ A+P ++
Sbjct: 358 RKRPMHNVVYRPGENPVTQRLPAVLSRIGIILASPLKR 395


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 215 QPARLVLLMLFIMPLTMNW 271
           QP  L+ L+   MPL  NW
Sbjct: 491 QPEPLIELIEHWMPLLPNW 509


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 22  WHKRRATGGKRAP 60
           WH  +   GKR P
Sbjct: 148 WHPGKIVNGKRVP 160


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 211 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYL 354
           C TR + + D +   + + +   +T    A V ++A    QW E+  L
Sbjct: 22  CGTRPSFVSDEMIATAASVVNACQTQTGVATVDIEAVRNGQWPETRQL 69


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 22  WHKRRATGGKRAP 60
           WH  +   GKR P
Sbjct: 148 WHPGKIVNGKRVP 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,487
Number of Sequences: 438
Number of extensions: 2525
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)