Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B22
(203 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 29 0.11
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 25 1.8
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 25 1.8
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 24 3.2
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 24 3.2
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 24 3.2
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 24 3.2
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 23 4.2
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 23 4.2
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 23 5.5
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 23 5.5
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 23 5.5
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 23 5.5
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 23 7.3
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 23 7.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 23 7.3
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 23 7.3
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 22 9.7
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 28.7 bits (61), Expect = 0.11
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 69 ILLSMSYISYVCAFKYIREVSSLCFTPHNLIY 164
++L I+ V ++ EVSSLCFT N++Y
Sbjct: 508 LILFFEGITEVGRYQCDTEVSSLCFTEENVVY 539
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 108 KHIHTRCTTSIIRYSLDGVATHTKHASAP 22
KH T SIIR +++GV HT H P
Sbjct: 160 KHSSTNLR-SIIRPNIEGVQIHTIHLPRP 187
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 94 EMYDIDNKILVRWSGNTHKTCVRA 23
++ D DN+I+ W G+ K C +A
Sbjct: 311 DLSDSDNEIVKIWYGDEEKICKKA 334
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 8 GRARQGADACFVCVATPSNEY 70
GR R G D +C+ SNEY
Sbjct: 37 GRKRAGVDEFPLCIHLVSNEY 57
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 40 CVCCHSI*RVSYYRCRTSRMY-VLLNIY 120
C CC + SYY+ +T++ Y V ++ Y
Sbjct: 237 CYCCGNKFNESYYQSQTAQKYNVCISCY 264
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 8 GRARQGADACFVCVATPSNEY 70
GR R G D +C+ SNEY
Sbjct: 37 GRKRAGVDEFPLCIHLVSNEY 57
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 57 HLTSILLSMSYISYVCAFKYIREVSSLC 140
H + L +S +Y YIRE+S LC
Sbjct: 349 HFNGVALIISQANYDDWNPYIREISVLC 376
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 28 GRMFCVCCHSI*RVSYYRCR 87
G +F V CHS+ R+ Y R
Sbjct: 161 GLVFAVACHSLSRIFLYDVR 180
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 36 VLCVLPLHLTSILLSMSYISYVCAFKYIREVSSLCFT 146
+L + LH+ I L ++ +S + +KY S++ T
Sbjct: 236 ILSSMVLHIIPITLEIAMVSGILTYKYGPSFSAIAAT 272
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +2
Query: 17 RQGADACFVCVATPSNEYLIIDVVHL 94
R DAC + P+N +++++ HL
Sbjct: 291 RPSDDACVLQYFIPANAMMVVELSHL 316
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 60 LTSILLSMSYISYVCA 107
L +LL SYI YVCA
Sbjct: 6 LMLVLLVCSYIHYVCA 21
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -2
Query: 79 DNKILVRWSGNTHKTCVRALARSPL 5
D + W N HKT A SPL
Sbjct: 370 DPSLYSTWIANKHKTASSATVDSPL 394
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 51 PLHLTSILLSMSYISYVCAFKYIREVSSLCFTPHNLI 161
P + S +L+ + Y+C+ Y+R SS T L+
Sbjct: 158 PGTVDSDILASCHARYICSTSYLRMTSSDFTTADTLV 194
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 23 GADACFVCVATPS 61
G++ C C+ATPS
Sbjct: 50 GSEPCQACIATPS 62
>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 250
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 85 DIDNKILVRWSGNTHKTCVRALARSPLV 2
D +NK+L + N H + +RAL + L+
Sbjct: 22 DKENKLLAYVNDNRHFSLIRALHLADLI 49
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 17 RQGADACFVCVATPSNEYLIIDVV 88
++ ADA + A P +E L+IDVV
Sbjct: 524 KRKADAEAIANAQPGSEPLLIDVV 547
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 114 YIREVSSLCFTPHNLIYSKLN 176
YI + +LC P NL+ S N
Sbjct: 386 YIASIIALCMCPWNLLSSNNN 406
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 12 ERARARTHVLCVLPLHLTSILLS 80
ER V+ +LP H+T ILLS
Sbjct: 402 ERGVVWEEVIIMLPPHVTLILLS 424
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 816,591
Number of Sequences: 5004
Number of extensions: 12841
Number of successful extensions: 37
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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