Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B22
         (203 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72...    29   0.52 
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    26   3.6  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    26   3.6  
08_01_1071 + 10948765-10949229                                         26   4.8  
03_01_0644 - 4719954-4720022,4720445-4720912,4721009-4721312,472...    26   4.8  
02_04_0083 + 19566476-19566539,19566781-19567006,19567206-195673...    26   4.8  

>02_01_0099 +
           726576-727105,727899-728048,728510-728635,728726-729714,
           729776-729818,730101-730218,730743-730853
          Length = 688

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +3

Query: 72  LLSMSYISYVCAFKYIREVSSLCFTPHNLIYSKLN*IKMEILL 200
           +L  S+ISY+C F ++  V +  F   N+     + +++++++
Sbjct: 527 ILIFSFISYMCKFNFLTSVQNFVFKDDNMEQKLKSLVEIDLII 569


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 3    TRGERARARTHVLCVLPLHLTSILLSMSYISYVCAFKYIREVSSLCFT 146
            T  E+    T ++ + PL +T+ L +  Y S  CAFK+   + +  FT
Sbjct: 1294 TLPEKYAPPTELIDLQPLPVTA-LRNARYESLYCAFKHFNPIQTQVFT 1340


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 45  VLPLHLTSILLSMSYISYVCAFKYIREVSSLCFTPHNLIYSKLN 176
           +L  H++SIL+ ++++ ++CAF    E+  L    H L  S  +
Sbjct: 656 LLVKHISSILVIITHMRHLCAFS---ELEKLTLELHTLFMSSFD 696


>08_01_1071 + 10948765-10949229
          Length = 154

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 32  ACFVCVATPSNEYLIIDVVHLVCMC 106
           ACF  V TP++ +LI D+  ++  C
Sbjct: 59  ACFRVVETPTHLWLIADISDIMTAC 83


>03_01_0644 -
           4719954-4720022,4720445-4720912,4721009-4721312,
           4722321-4722745
          Length = 421

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 109 KAHTYEMYDIDNKILVRWSGNTHKT 35
           KA  +  YD   K L++WSGN   T
Sbjct: 195 KAVNFYAYDTYRKQLLKWSGNDETT 219


>02_04_0083 +
           19566476-19566539,19566781-19567006,19567206-19567389,
           19569483-19569582,19570015-19570122,19570373-19570452,
           19570566-19570644,19570774-19570832,19570938-19571006,
           19571577-19571690,19571772-19571840,19572340-19572361,
           19572455-19572522,19573630-19573715,19574220-19574349,
           19575032-19575133,19575211-19575279
          Length = 542

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 87  YISYVCAFKYIREVSSLCFTP 149
           Y  Y  AF Y+ E S L FTP
Sbjct: 242 YSIYFLAFNYLAEASILLFTP 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,122,712
Number of Sequences: 37544
Number of extensions: 76872
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)