Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B22
         (203 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043175-1|AAH43175.1|  372|Homo sapiens cyclin J protein.             27   8.4  
AL356155-2|CAI16401.2|  372|Homo sapiens cyclin J protein.             27   8.4  

>BC043175-1|AAH43175.1|  372|Homo sapiens cyclin J protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60  LTSILLSMSYISYVCAFKYIREVSSL-CFTPHNLIYSKLN*IKMEILLI 203
           L+ +LL+  +     +   + +++SL C T  NL+ +K N + ME+LL+
Sbjct: 87  LSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLL 135


>AL356155-2|CAI16401.2|  372|Homo sapiens cyclin J protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60  LTSILLSMSYISYVCAFKYIREVSSL-CFTPHNLIYSKLN*IKMEILLI 203
           L+ +LL+  +     +   + +++SL C T  NL+ +K N + ME+LL+
Sbjct: 87  LSCLLLASKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELLLL 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,024,997
Number of Sequences: 237096
Number of extensions: 483973
Number of successful extensions: 4558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4558
length of database: 76,859,062
effective HSP length: 46
effective length of database: 65,952,646
effective search space used: 1385005566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)