Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B22
         (203 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical pr...    29   0.45 
Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AL032633-2|CAA21595.2|  428|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z74041-5|CAA98516.2|  354|Caenorhabditis elegans Hypothetical
           protein T03F7.2 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 30  THVLCVLPLHLTSILLSMSYISYVCAFKYIREVSSLCFTPHNLIYSKLN*IKMEI 194
           TH + VL L+ T I      I+Y+CA   +  V  L F  H+L Y K +  K+ +
Sbjct: 199 THSVFVLSLNHTPI------ITYLCALSIVAVVQILFFGGHSLTYLKTDARKLSV 247


>Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical
           protein F34H10.4 protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 21  RARTHVLCVLPLHLTSILLSMSYISYV 101
           +A+ HV+  LP+++TS +L + ++S +
Sbjct: 415 QAQNHVVVFLPIYMTSEVLPIHFLSNI 441


>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 66  SILLSMSYISYVCAFKYIREVSSLCFTPHNLIYSKLN 176
           +IL+S   I+Y C FK   E +   +    L+YS L+
Sbjct: 338 NILMSYQKIAYFCRFKRNDEDALRAYQGMALVYSDLD 374


>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 18  ARARTHVLCVLPLHLTSILL 77
           A  RTH+ C+L + L S++L
Sbjct: 310 ASLRTHLFCILTILLASVVL 329


>AL032633-2|CAA21595.2|  428|Caenorhabditis elegans Hypothetical
           protein Y106G6A.2a protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 108 KHIHTRCTTSIIRYSLDGVATHTKHASAP 22
           +H HT     I   S DG+ + T HA  P
Sbjct: 21  RHSHTVTGVPIPGISADGIGSPTDHAHTP 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,503,804
Number of Sequences: 27780
Number of extensions: 71434
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)