Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B21
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   4.3  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   4.3  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   4.3  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   5.7  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    24   7.6  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    24   10.0 
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    24   10.0 

>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +2

Query: 5   EDNREAAQGNDESCLAILNNFYSDGVKWHDVACHH 109
           +DN     G D++ L   +    +   W D+  HH
Sbjct: 152 QDNNLLYSGGDDAALVCYDQRIPNSCIWRDIQVHH 186


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 95  VACHHVKPFVCEDSDELLN 151
           V C ++  F+CE S ELLN
Sbjct: 227 VFCLNIMTFLCEKSKELLN 245


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 267 GCLRLSYLLPNNY 305
           GC+RL ++LPN Y
Sbjct: 260 GCIRLLHILPNKY 272


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 129 RTATNYSISCVPAIPTY 179
           R+A++Y++SC+  +P Y
Sbjct: 231 RSASDYNVSCILTLPIY 247


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 118 VRLRGQRRTTQFRAFPQSQLTYLSC 192
           ++LRGQ    + R F  S L+ +SC
Sbjct: 172 IKLRGQDSFRRLRTFSDSSLSPVSC 196


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 47  LAILNNFYSDGVKWHDVACHHVKPFVCEDSDELLNFVRSRNPNLRI 184
           + +L ++ S   +W  +  H V P   ED+ ELL+ +   +P  RI
Sbjct: 237 VTLLQDYKSTFPRWKRMDLHKVVPNGEEDAIELLSAMLVYDPAHRI 282


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 104 HHVKPFVCEDSDELLNFVRSR 166
           H++   +CE  D LLN +R R
Sbjct: 339 HYMIKEICEQPDSLLNTMRGR 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,190
Number of Sequences: 5004
Number of extensions: 25166
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)