Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B21
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0602 + 23577328-23579805                                         27   4.1  
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514...    27   5.5  
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309...    27   5.5  
11_06_0494 + 24316007-24316365,24317307-24317706                       27   7.2  
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160...    26   9.5  

>01_05_0602 + 23577328-23579805
          Length = 825

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 23  AQGNDESCLAILNNFYSDGVKWHDVA 100
           +Q +D S   +L+N Y+D  +W+DVA
Sbjct: 762 SQPDDISSCILLSNIYADLKRWNDVA 787


>12_01_0624 -
           5137096-5137310,5137923-5138380,5138428-5140070,
           5140245-5140462,5140589-5140757,5141249-5141305
          Length = 919

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 222 SMVLDG*RCCTKMATGCLRLSYL 290
           S+ LDG  CCTK+  G  +LS L
Sbjct: 601 SLKLDGLPCCTKLPDGLCQLSCL 623


>01_03_0151 -
           13229861-13230347,13230442-13230540,13230701-13230918,
           13231210-13231317,13231366-13231518,13232962-13233015,
           13233276-13233374,13234458-13234551,13234638-13234715,
           13237696-13237766,13238321-13238416,13238505-13238582,
           13238683-13238751,13238830-13238897,13239038-13239115,
           13239190-13239289,13240002-13240061,13240488-13240579,
           13241730-13241779,13241870-13241954,13242035-13242134,
           13242933-13243013,13244827-13244907
          Length = 832

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 17  EAAQGNDESCLAILNNFYSDGVKWHDVACHHVKPFVCEDSDEL 145
           EAA  N      +     +DG KW D    HV     EDS EL
Sbjct: 17  EAAAANTSGMQRVKVYRLTDGGKWDDRGTGHVNIDFLEDSKEL 59


>11_06_0494 + 24316007-24316365,24317307-24317706
          Length = 252

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 134 SDELLNFVRSRNPNLRI*AAYKIIITFLAFYGFRWLT 244
           SDELL ++  R+P+L++ + +    T ++  GF  LT
Sbjct: 110 SDELLEYIGDRSPSLKVISVWCSDETRMSTEGFAELT 146


>10_01_0132 -
           1601421-1601657,1601761-1601922,1602812-1603721,
           1604587-1604651,1604704-1604746,1605086-1605128,
           1605874-1605955,1606270-1606464,1606567-1606721,
           1611207-1611435,1611538-1611693,1612539-1613476,
           1614946-1614967
          Length = 1078

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 127 ANERLHVMASHVVPLDAVTVEVVQDSQTRFIVTLSSFTV 11
           A+   ++  SH + L A  VEV QD QTR  + L    V
Sbjct: 147 ASADANLWISHALQLKAPVVEVDQDIQTRDTLELGGHAV 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,030,707
Number of Sequences: 37544
Number of extensions: 153684
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)