Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B21
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    27   6.5  
U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis...    26   8.7  
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis...    26   8.7  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 11  NREAAQGNDESCLAILNNFYSDGVKWHDVACHHVKPFVCEDSDELLNFVRSRNPNLRI 184
           N  + Q ++ SC+ + +    D  KW D  C    P  C + +  + + ++   NL I
Sbjct: 751 NVTSCQLSERSCVTVASEAAGDPSKWWDCVC----PLPCSNQEYSVTWSKANFVNLPI 804


>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resistance
            related protein2 protein.
          Length = 1525

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 68   YSDGVKWHDVACHHVKPFVCEDSDELLNFVRSRNPNLRI 184
            YSD   W  +   H+KPFV    D L + +     NL +
Sbjct: 1387 YSDSQVWEALENAHLKPFVKSLQDGLEHKISKGGENLSV 1425


>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resistance
            protein familyprotein 2 protein.
          Length = 1525

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 68   YSDGVKWHDVACHHVKPFVCEDSDELLNFVRSRNPNLRI 184
            YSD   W  +   H+KPFV    D L + +     NL +
Sbjct: 1387 YSDSQVWEALENAHLKPFVKSLQDGLEHKISEGGENLSV 1425


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 279 LSYLLPNNYFCSI*FFIRIEAIFKD 353
           +S ++P+  FCS  FFI++ +  KD
Sbjct: 919 ISTVIPDKQFCSEEFFIKLNSNLKD 943


>AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical
           protein Y19D10A.9 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 71  SDGVKWHDVACHHVKPFVC 127
           +DG KW  +  HH  PFVC
Sbjct: 121 TDG-KWQTIGKHHELPFVC 138


>AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical
           protein F56A4.2 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 71  SDGVKWHDVACHHVKPFVC 127
           +DG KW  +  HH  PFVC
Sbjct: 121 TDG-KWQTIGKHHELPFVC 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,106,957
Number of Sequences: 27780
Number of extensions: 143427
Number of successful extensions: 335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)