Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B20
         (170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    24   2.3  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    23   7.1  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    23   7.1  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    22   9.4  

>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 82  NSGS*IISFFENIKSAGILFCDKSSSD 2
           + GS +I  F N+  A  LFC   S D
Sbjct: 391 DDGSSLIGVFSNLTKAFALFCANESFD 417


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 76  HCYSLLFFITYLLNYCHYLVL 138
           H +SL+F + +++N C+   L
Sbjct: 5   HTFSLIFSLLFVINPCYSATL 25


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 67  FRTHCYSLLFFITYLLNYCHY 129
           F T C+ +    TY +NY HY
Sbjct: 462 FSTFCWHVEDNYTYSVNYQHY 482


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 49  NIKSAGILFCDKSSS 5
           N+K+  ILFC +S+S
Sbjct: 538 NLKNGDILFCPQSTS 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,046
Number of Sequences: 5004
Number of extensions: 8635
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)