Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B20
         (170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical ...    31   0.083
AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical ...    31   0.083
U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical pr...    31   0.11 
U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical pr...    31   0.14 
AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical ...    30   0.25 
Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical pr...    25   5.4  

>AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2B.2 protein.
          Length = 382

 Score = 31.5 bits (68), Expect = 0.083
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = +1

Query: 88  LLFFITYLLNYCHYLVLYMHL 150
           L +F++YL+++CHY +++ +L
Sbjct: 146 LFYFVSYLIDFCHYSIIFSNL 166


>AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical
           protein F58F6.6 protein.
          Length = 331

 Score = 31.5 bits (68), Expect = 0.083
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = +1

Query: 88  LLFFITYLLNYCHYLVLYMHL 150
           + +F++YL+++CHY +L+ +L
Sbjct: 101 MFYFVSYLIDFCHYSILFSNL 121


>U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical
           protein ZC196.8 protein.
          Length = 271

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 88  LLFFITYLLNYCHYLVLYMHL 150
           L +F +YL+++CHY +L+ +L
Sbjct: 42  LFYFFSYLIDFCHYSILFSNL 62


>U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC196.9 protein.
          Length = 374

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 7/21 (33%), Positives = 18/21 (85%)
 Frame = +1

Query: 88  LLFFITYLLNYCHYLVLYMHL 150
           + +F++Y++++CHY +L+ +L
Sbjct: 144 MFYFVSYIIDFCHYSILFSNL 164


>AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical
           protein F54E2.5 protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 88  LLFFITYLLNYCHYLVLYMHL 150
           L  FI+YL+++CHY +++ +L
Sbjct: 101 LFSFISYLIDFCHYSIIFSNL 121



 Score = 27.9 bits (59), Expect = 1.0
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +1

Query: 97  FITYLLNYCHYLVLYMHL 150
           FI++L+++CHY +L+ +L
Sbjct: 482 FISHLIDFCHYSILFSNL 499


>Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical
           protein C33D9.4 protein.
          Length = 323

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 76  HCYSLLFFITYLLNYC 123
           H + L+F  TY+ NYC
Sbjct: 99  HFFKLIFISTYIFNYC 114


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 100 ITYLLNYCHYLVLYMHL 150
           I+Y+++ CHY +L+ +L
Sbjct: 129 ISYIIDICHYTILFCNL 145


>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 76  HCYSLLFFITYLLNYC 123
           H  +L+FF T+  NYC
Sbjct: 103 HFLNLIFFFTFYFNYC 118


>U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical
           protein C17H11.1 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 157 SNVNAYTKRDNDNNLINT 104
           SNVN++T R  D+NLI +
Sbjct: 275 SNVNSFTMRREDSNLIRS 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,226
Number of Sequences: 27780
Number of extensions: 44249
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 12,740,198
effective HSP length: 37
effective length of database: 11,712,338
effective search space used: 222534422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)