Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B18
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 180 7e-47
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 180 7e-47
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 180 7e-47
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 91 6e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 89 2e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 44 8e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.002
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 36 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 35 0.005
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 35 0.005
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.25
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 27 1.0
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 1.8
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 2.4
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 4.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 4.1
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 4.1
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 25 5.5
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 7.2
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 7.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 9.5
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 24 9.5
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 24 9.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 180 bits (438), Expect = 7e-47
Identities = 83/90 (92%), Positives = 86/90 (95%)
Frame = +3
Query: 120 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 299
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 300 DKLKAERERGITIDIALWKFETGKYYVTII 389
DKLKAERERGITIDIALWKFET KY VT+I
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVI 90
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 180 bits (438), Expect = 7e-47
Identities = 83/90 (92%), Positives = 86/90 (95%)
Frame = +3
Query: 120 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 299
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 300 DKLKAERERGITIDIALWKFETGKYYVTII 389
DKLKAERERGITIDIALWKFET KY VT+I
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVI 90
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 180 bits (438), Expect = 7e-47
Identities = 83/90 (92%), Positives = 86/90 (95%)
Frame = +3
Query: 120 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 299
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 300 DKLKAERERGITIDIALWKFETGKYYVTII 389
DKLKAERERGITIDIALWKFET KY VT+I
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVI 90
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 91.1 bits (216), Expect = 6e-20
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +3
Query: 132 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 311
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 312 AERERGITIDIALWKFET 365
ERE+G T+++ FET
Sbjct: 296 EEREKGKTVEVGRAYFET 313
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 89.4 bits (212), Expect = 2e-19
Identities = 38/77 (49%), Positives = 55/77 (71%)
Frame = +3
Query: 141 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 320
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 321 ERGITIDIALWKFETGK 371
RG+T+D+A FE+ K
Sbjct: 238 ARGVTMDVASTTFESDK 254
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 44.0 bits (99), Expect = 8e-06
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 126 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 305
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 306 LKAERERGITIDIALWKFET-GKYYVTI 386
E+ RGITI A ++ET ++Y +
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHV 121
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 36.3 bits (80), Expect = 0.002
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +3
Query: 144 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 323
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 324 RGITIDIA 347
+GITI A
Sbjct: 111 KGITIQSA 118
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 36.3 bits (80), Expect = 0.002
Identities = 26/82 (31%), Positives = 39/82 (47%)
Frame = +3
Query: 144 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 323
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 324 RGITIDIALWKFETGKYYVTII 389
RGITI+ A F + +I
Sbjct: 77 RGITINSAAISFTWRNQRINLI 98
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 34.7 bits (76), Expect = 0.005
Identities = 28/73 (38%), Positives = 34/73 (46%)
Frame = +3
Query: 120 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 299
MGK N+ VI HVD GKST T L+ K G I A + G F +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----M 57
Query: 300 DKLKAERERGITI 338
D E+ERG+TI
Sbjct: 58 DTRADEQERGVTI 70
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 34.7 bits (76), Expect = 0.005
Identities = 28/73 (38%), Positives = 34/73 (46%)
Frame = +3
Query: 120 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 299
MGK N+ VI HVD GKST T L+ K G I A + G F +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII----------SAAKAGDARF-----M 57
Query: 300 DKLKAERERGITI 338
D E+ERG+TI
Sbjct: 58 DTRADEQERGVTI 70
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.1 bits (62), Expect = 0.25
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 144 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 323
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 324 RGITI 338
RGIT+
Sbjct: 104 RGITV 108
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.1 bits (57), Expect = 1.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 331 IPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMVRLSIPPH 209
IP+ A S+ N++ + ++ LP + S V+L +P H
Sbjct: 173 IPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 211 AVVSTNVPSKSSRRKPRKWVRVPS 282
A++S + K + +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 2.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 361 SNFQRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSNFSMV 230
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 4.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 114 PKMGKEKVHINIVVIGHVDSGKST 185
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 95 QPVISAFVPXFTAAPXGST 39
QPVI++ VP TAAP T
Sbjct: 780 QPVIASTVPVQTAAPSSQT 798
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 4.1
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 332 HHRY-CSLEVRNRQILCHHH 388
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.6 bits (51), Expect = 5.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 352 QRAISMVIPRSRSAFSLSNTQAYLKEPLPISWASFSN 242
Q A+S +IP++RSA N LK L S+ + N
Sbjct: 33 QAAVSQLIPQARSAIQTGNALQGLKTLL--SYVPYGN 67
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 147 IVVIGHVDSGKSTTTGHLIYKC 212
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 150 VVIGHVDSGKSTTTGHLIYKCG 215
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 9.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 147 IVVIGHVDSGKSTTTGHLIYKCG 215
++V+G SGK+T +Y+ G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 156 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 287
I HV G+ L + GG RTIE E E + KG++ +
Sbjct: 297 IAHVRDGE-LHVHRLRREGGGSTTRTIETLEMEIASVMKGNYDH 339
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 144 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR 230
N ++ HVD GK+T L+ G I +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSK 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,332
Number of Sequences: 5004
Number of extensions: 31111
Number of successful extensions: 111
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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