Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B18
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   191   2e-51
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   191   2e-51
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    72   3e-15
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    39   2e-05
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.41 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.54 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   5.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   5.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   5.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   6.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    20   8.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  191 bits (466), Expect = 2e-51
 Identities = 88/90 (97%), Positives = 89/90 (98%)
 Frame = +3

Query: 120 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 299
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 300 DKLKAERERGITIDIALWKFETGKYYVTII 389
           DKLKAERERGITIDIALWKFET KYYVTII
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTII 90


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  191 bits (466), Expect = 2e-51
 Identities = 88/90 (97%), Positives = 89/90 (98%)
 Frame = +3

Query: 120 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 299
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 300 DKLKAERERGITIDIALWKFETGKYYVTII 389
           DKLKAERERGITIDIALWKFET KYYVTII
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTII 90


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 71.7 bits (168), Expect = 3e-15
 Identities = 32/33 (96%), Positives = 32/33 (96%)
 Frame = +3

Query: 291 WVLDKLKAERERGITIDIALWKFETGKYYVTII 389
           WVLDKLKAERERGITIDIALWKFET KYYVTII
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTII 33


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 38.7 bits (86), Expect = 2e-05
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 339 DIALWKFETGKYYVTII 389
           DIALWKFET KYYVTII
Sbjct: 1   DIALWKFETSKYYVTII 17


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 132 KVHINIVVIGHVDSGKST 185
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 141 INIVVIGHVDSGKST 185
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 222 DKRTIEKFEKEAQEMG 269
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 222 DKRTIEKFEKEAQEMG 269
           DK+   KFE+EA+++G
Sbjct: 112 DKKFRVKFEEEAKKLG 127


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 222 DKRTIEKFEKEAQEMG 269
           DK+   KFE+EA+++G
Sbjct: 112 DKKYRVKFEEEAKKLG 127


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -3

Query: 237 RWYVCRYHRIC 205
           RW + ++HR+C
Sbjct: 186 RWDLGKFHRVC 196


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 205  TNAVVSTNVPSKSSRRKPRKWVRVPSNTLGYWTN 306
            TNA   +   S+S  R+  ++ RVPS   G  T+
Sbjct: 1767 TNASAHSRSGSQSMPRQNGRYSRVPSQGGGSGTH 1800


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 296 YPSVFEGTLTHFLG 255
           YPS+ +GT ++ LG
Sbjct: 25  YPSIRQGTTSYCLG 38


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 386 DGDIVFAGFELPESNIDGDTT 324
           DG I  A F + +  I GD T
Sbjct: 121 DGHIKIADFGMCKEGISGDKT 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,690
Number of Sequences: 438
Number of extensions: 2507
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)