Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B16
         (205 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    25   1.4  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    22   9.7  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    22   9.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    22   9.7  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 71 TTTAHNQNHLPKQVNAQSTL 12
          TTT  N N++PK+  AQS +
Sbjct: 22 TTTPDNANNVPKEPRAQSMI 41


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 101 LTHNPTIINLTTTAHNQNHLP 39
           + H   IINL+TTA +   +P
Sbjct: 121 VVHGKIIINLSTTAQSTLQVP 141


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 120 KFRRNRLQVFIIAMELTAEGKTPEYMAL 203
           KF R+ +++ +   ELT EG    Y+A+
Sbjct: 212 KFMRDPIRILVKKDELTLEGIKQFYVAV 239


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 163 NSQQKVKLLNIWH 201
           ++QQK+ LLNI+H
Sbjct: 506 SNQQKIVLLNIFH 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,335
Number of Sequences: 5004
Number of extensions: 12735
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)